PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009801114.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 287aa MW: 33530.6 Da PI: 5.2104

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.6	5.1e-49	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelv++yL +k++++++ ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+ky+tg r+nrat sgyWkatgkd++v++ XP_009801114.1 10 LPPGFRFCPSDEELVCHYLFNKITNEEIIK-GTLVEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYTTGFRANRATISGYWKATGKDRTVFDP 103 79***********************766.78***********87788899**********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++e vg++ktLvfyk+rap+g kt W+mhe+rle XP_009801114.1 104 cTREIVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 88889*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-59	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.29	10	156	IPR003441	NAC domain
Pfam	PF02365	2.5E-26	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDLREIGATL PPGFRFCPSD EELVCHYLFN KITNEEIIKG TLVEIDLHTC EPWQLPEVAK 60 LNSSEWYFFS FRDRKYTTGF RANRATISGY WKATGKDRTV FDPCTREIVG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKTKSE NNNNCTNNLS PQNMYEAAVT 180 SPELYNHSLN YDINNQNPPY QSQNSNTIHH HLFDLLVKNH LQLSHQEMNE VSKDETTVNL 240 SKCSQEDDQY GLMFDMDFEV PCLQDEGVLH SSLEDMKFDD ENSMVFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-46	9	162	19	174	NAC domain-containing protein 19
3swm_B	6e-46	9	162	19	174	NAC domain-containing protein 19
3swm_C	6e-46	9	162	19	174	NAC domain-containing protein 19
3swm_D	6e-46	9	162	19	174	NAC domain-containing protein 19
3swp_A	6e-46	9	162	19	174	NAC domain-containing protein 19
3swp_B	6e-46	9	162	19	174	NAC domain-containing protein 19
3swp_C	6e-46	9	162	19	174	NAC domain-containing protein 19
3swp_D	6e-46	9	162	19	174	NAC domain-containing protein 19
4dul_A	5e-46	9	162	16	171	NAC domain-containing protein 19
4dul_B	5e-46	9	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801114.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Refseq	XP_016485618.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-62	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A1S4B9Z4	0.0	A0A1S4B9Z4_TOBAC; protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A1U7YPF4	0.0	A0A1U7YPF4_NICSY; protein CUP-SHAPED COTYLEDON 3-like
STRING	XP_009801114.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	1e-89	NAC domain containing protein 74

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]