PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009800952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 258aa MW: 28403.6 Da PI: 6.9308 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.7 | 8e-19 | 176 | 210 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l XP_009800952.1 176 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 210 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.1E-72 | 1 | 254 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.503 | 170 | 206 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.1E-17 | 170 | 224 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.19E-14 | 172 | 233 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.1E-15 | 174 | 208 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.44E-14 | 175 | 223 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.0E-16 | 176 | 210 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDGTFDEFLV DEFLDFSNNG SAEDEEEEHP PGYNGKKPEK VEAENITNLS GKQEFSELNF 60 PENDEDNLEW LAHFVEDSFT HTAGKLLNQS VQDNKSCFAT PVQTGARTKH TAAARVWSLP 120 LTESASTSTS SSSTTTTSFL SSPCFIHTAE SIVRKPAAVN KRRKKTAGGV VQPRRCSHCG 180 VQKTPQWRAG PMGAKTLCNA CGVRFKSGRL LPEYRPACSP TFSSELHSNN HRKVLEMRRK 240 MEVEGGGLAL SGSEFLKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800952.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Refseq | XP_016510379.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 3e-55 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A1S4DAZ0 | 0.0 | A0A1S4DAZ0_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7YA07 | 0.0 | A0A1U7YA07_NICSY; GATA transcription factor | ||||
STRING | XP_009800952.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 5e-56 | GATA transcription factor 5 |