PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009800949.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 511aa MW: 56293.1 Da PI: 6.4277

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009800949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	236	295	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ XP_009800949.1 236 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 295 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-32	221	297	IPR003657	WRKY domain
SuperFamily	SSF118290	1.01E-27	229	297	IPR003657	WRKY domain
PROSITE profile	PS50811	29.161	231	297	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	236	296	IPR003657	WRKY domain
Pfam	PF03106	4.0E-27	237	295	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MENNKSENDE MEIDLSLKLD SREEEIEPLN EENQSSELVN AKTQGKDQEL SKAETSGSSK 60 TEELSLLQTE MNKMKEENKF LRKAVEQTMK DYYDLQAKFA IIHQNNHDKD HRNFLSLSGN 120 DDTTEGLTRS PKILDIKNRS LSQTSQELDD IMDGDQLGLS LTLVSSNSSI TTNKLVESTE 180 LEERKEKIKE DNAAITTQIQ NKGNLQGGLT SHVTTASPPN RKARVSVRAR CESATMNDGC 240 QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA 300 TAMASTTSAA ASFMLVDSSI NPLLNGNINQ AVNFPNYHNN APNYSHHIPN SSSSSSPYFS 360 NLRNNILNSS DPNILLDLTK NISNDHHHQF PFVSSSSNSS ATATANHLSQ YSWMPKLPSN 420 NYDGNSNTIV NNLFTGPKLQ GDHHHHQNGS SNPILAENMS AIATDPKFRV AVAAAISSLI 480 NKDQSHPIST TMPSSLGDHG ESNGGSVRHS Q

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MENNKSENDE MEIDLSLKLD SREEEIEPLN EENQSSELVN AKTQGKDQEL SKAETSGSSK  60
TEELSLLQTE MNKMKEENKF LRKAVEQTMK DYYDLQAKFA IIHQNNHDKD HRNFLSLSGN  120
DDTTEGLTRS PKILDIKNRS LSQTSQELDD IMDGDQLGLS LTLVSSNSSI TTNKLVESTE  180
LEERKEKIKE DNAAITTQIQ NKGNLQGGLT SHVTTASPPN RKARVSVRAR CESATMNDGC  240
QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA  300
TAMASTTSAA ASFMLVDSSI NPLLNGNINQ AVNFPNYHNN APNYSHHIPN SSSSSSPYFS  360
NLRNNILNSS DPNILLDLTK NISNDHHHQF PFVSSSSNSS ATATANHLSQ YSWMPKLPSN  420
NYDGNSNTIV NNLFTGPKLQ GDHHHHQNGS SNPILAENMS AIATDPKFRV AVAAAISSLI  480
NKDQSHPIST TMPSSLGDHG ESNGGSVRHS Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	223	299	1	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-55	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-55	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800949.1	0.0	PREDICTED: probable WRKY transcription factor 9
Refseq	XP_016484769.1	0.0	PREDICTED: probable WRKY transcription factor 9
Swissprot	Q9C9F0	6e-75	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A1S4B7C7	0.0	A0A1S4B7C7_TOBAC; probable WRKY transcription factor 9
TrEMBL	A0A1U7YNY3	0.0	A0A1U7YNY3_NICSY; probable WRKY transcription factor 9
STRING	XP_009800949.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7287	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-70	WRKY DNA-binding protein 9