PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009800929.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 643aa MW: 70112.4 Da PI: 7.3521

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009800929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	286	345	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_009800929.1 286 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAqSCPVRKQVQRCAEDMSILITTYEGTHNHP 345 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.8E-32	271	347	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	279	347	IPR003657	WRKY domain
PROSITE profile	PS50811	28.805	281	347	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	286	346	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	287	345	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MPYMEASLRN SIHGAVVKEE NKNKAESSPD REGCAENICL KVGKGRKERE DDKSKPSSPQ 60 HKDFTLDYNE GAAVMVKRER SPPELNSMAS SSTQKEQNDQ LASAKVEMRE VMEENERLRM 120 HLDRIMKDYR NLQMQFHDIA QKEAEKSSST VNTTHHESDQ EADQLVSLSL GRTSSDIKKE 180 ELFKIFSKDK AHYNNEEEEH KAGGLTLGLD CKFEMSAKTT PTTESSPVNL SPENSLEETK 240 EENGETWPPN KILKTMRSHG DDDVSQQNPT KRARVSVRVR CDAPTMNDGC QWRKYGQKIA 300 KGNPCPRAYY RCTVAQSCPV RKQVQRCAED MSILITTYEG THNHPLPLAA TAMASTTAAA 360 ASMLLSGSSS SSDPSPQVTA AAATTTTSAN LNGLNFYLSD TSKSKPPFYF PNSSFSSSSA 420 PNSLPTITLD LTSTSSSSSL SHLTRMGSTS TFPPARYNNN SSANVLNFSS LESNPLPISW 480 SNGVLNYANQ AYNKNQNIAS LAFSSRPTQE NLFQSYLQRN NTQSSLPPDA ISAATKAITS 540 DPNFHSALAA ALTSIIGNTG IGNNSAGQNN LNHVTEPFPV LSSLPSSSNP NKCSSNFLNK 600 PTSSSANTQS ANNNLVFFTQ PNSSLPFSAP KGKSTSPSDN KFD

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MPYMEASLRN SIHGAVVKEE NKNKAESSPD REGCAENICL KVGKGRKERE DDKSKPSSPQ  60
HKDFTLDYNE GAAVMVKRER SPPELNSMAS SSTQKEQNDQ LASAKVEMRE VMEENERLRM  120
HLDRIMKDYR NLQMQFHDIA QKEAEKSSST VNTTHHESDQ EADQLVSLSL GRTSSDIKKE  180
ELFKIFSKDK AHYNNEEEEH KAGGLTLGLD CKFEMSAKTT PTTESSPVNL SPENSLEETK  240
EENGETWPPN KILKTMRSHG DDDVSQQNPT KRARVSVRVR CDAPTMNDGC QWRKYGQKIA  300
KGNPCPRAYY RCTVAQSCPV RKQVQRCAED MSILITTYEG THNHPLPLAA TAMASTTAAA  360
ASMLLSGSSS SSDPSPQVTA AAATTTTSAN LNGLNFYLSD TSKSKPPFYF PNSSFSSSSA  420
PNSLPTITLD LTSTSSSSSL SHLTRMGSTS TFPPARYNNN SSANVLNFSS LESNPLPISW  480
SNGVLNYANQ AYNKNQNIAS LAFSSRPTQE NLFQSYLQRN NTQSSLPPDA ISAATKAITS  540
DPNFHSALAA ALTSIIGNTG IGNNSAGQNN LNHVTEPFPV LSSLPSSSNP NKCSSNFLNK  600
PTSSSANTQS ANNNLVFFTQ PNSSLPFSAP KGKSTSPSDN KFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	273	347	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	1e-151	GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800929.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X2
Swissprot	D8VNC6	0.0	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1U7YNW3	0.0	A0A1U7YNW3_NICSY; probable WRKY transcription factor 72 isoform X2
STRING	XP_009800925.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-56	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]