PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009800925.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 644aa MW: 70240.6 Da PI: 7.3521

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009800925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	287	346	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_009800925.1 287 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAqSCPVRKQVQRCAEDMSILITTYEGTHNHP 346 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.8E-32	272	348	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	280	348	IPR003657	WRKY domain
PROSITE profile	PS50811	28.805	282	348	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	287	347	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	288	346	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MPYMEASLRN SIHGAVVKEE NKNKAESSPD REGCAENICL KVGKGRKERE DDKSKPSSPQ 60 HKDFTLDYNE QGAAVMVKRE RSPPELNSMA SSSTQKEQND QLASAKVEMR EVMEENERLR 120 MHLDRIMKDY RNLQMQFHDI AQKEAEKSSS TVNTTHHESD QEADQLVSLS LGRTSSDIKK 180 EELFKIFSKD KAHYNNEEEE HKAGGLTLGL DCKFEMSAKT TPTTESSPVN LSPENSLEET 240 KEENGETWPP NKILKTMRSH GDDDVSQQNP TKRARVSVRV RCDAPTMNDG CQWRKYGQKI 300 AKGNPCPRAY YRCTVAQSCP VRKQVQRCAE DMSILITTYE GTHNHPLPLA ATAMASTTAA 360 AASMLLSGSS SSSDPSPQVT AAAATTTTSA NLNGLNFYLS DTSKSKPPFY FPNSSFSSSS 420 APNSLPTITL DLTSTSSSSS LSHLTRMGST STFPPARYNN NSSANVLNFS SLESNPLPIS 480 WSNGVLNYAN QAYNKNQNIA SLAFSSRPTQ ENLFQSYLQR NNTQSSLPPD AISAATKAIT 540 SDPNFHSALA AALTSIIGNT GIGNNSAGQN NLNHVTEPFP VLSSLPSSSN PNKCSSNFLN 600 KPTSSSANTQ SANNNLVFFT QPNSSLPFSA PKGKSTSPSD NKFD

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MPYMEASLRN SIHGAVVKEE NKNKAESSPD REGCAENICL KVGKGRKERE DDKSKPSSPQ  60
HKDFTLDYNE QGAAVMVKRE RSPPELNSMA SSSTQKEQND QLASAKVEMR EVMEENERLR  120
MHLDRIMKDY RNLQMQFHDI AQKEAEKSSS TVNTTHHESD QEADQLVSLS LGRTSSDIKK  180
EELFKIFSKD KAHYNNEEEE HKAGGLTLGL DCKFEMSAKT TPTTESSPVN LSPENSLEET  240
KEENGETWPP NKILKTMRSH GDDDVSQQNP TKRARVSVRV RCDAPTMNDG CQWRKYGQKI  300
AKGNPCPRAY YRCTVAQSCP VRKQVQRCAE DMSILITTYE GTHNHPLPLA ATAMASTTAA  360
AASMLLSGSS SSSDPSPQVT AAAATTTTSA NLNGLNFYLS DTSKSKPPFY FPNSSFSSSS  420
APNSLPTITL DLTSTSSSSS LSHLTRMGST STFPPARYNN NSSANVLNFS SLESNPLPIS  480
WSNGVLNYAN QAYNKNQNIA SLAFSSRPTQ ENLFQSYLQR NNTQSSLPPD AISAATKAIT  540
SDPNFHSALA AALTSIIGNT GIGNNSAGQN NLNHVTEPFP VLSSLPSSSN PNKCSSNFLN  600
KPTSSSANTQ SANNNLVFFT QPNSSLPFSA PKGKSTSPSD NKFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	274	348	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	1e-151	GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800925.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
Swissprot	D8VNC6	0.0	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1U7YQ00	0.0	A0A1U7YQ00_NICSY; probable WRKY transcription factor 72 isoform X1
STRING	XP_009800925.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-56	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]