PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009800923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 33206.1 Da PI: 5.9182 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.5 | 3.2e-50 | 11 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelv++yL kk+++++ +l+ ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ XP_009800923.1 11 LPPGFRFYPSDEELVCHYLFKKIANED-SLKGTLVEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDP 104 79**********************999.45478***************87788899**************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++vg++ktLvfyk+rap+g kt W+mhe+rle XP_009800923.1 105 rTRTTVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 139 66778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-60 | 9 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.604 | 11 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MMGLRDIGAT LPPGFRFYPS DEELVCHYLF KKIANEDSLK GTLVEIDLHT CEPWQLPEVA 60 KLNSSEWYFF SFRDRKYATG FRTNRATTSG YWKATGKDRT VLDPRTRTTV GMRKTLVFYK 120 NRAPNGIKTG WIMHEFRLEN PNVPPKEDWV LCRVFHKAKA ENSSNNNILS PQNTYEVGVV 180 SSPNNNMDQY HALPYGGYRP NMAAAAVSQR PFHQRQKLFD LMEEDNNQSS YPQLSQEMNK 240 APSNDQIDED EYGFLLDMNF EDQSLQDGGV HSSIDDMRFD NNNSLVFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-48 | 10 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-48 | 10 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-48 | 10 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-48 | 10 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-48 | 10 | 157 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-48 | 10 | 157 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-48 | 10 | 157 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-57 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 1e-57 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800923.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Refseq | XP_016469611.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 2e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1S3ZZ69 | 0.0 | A0A1S3ZZ69_TOBAC; NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A1U7YCR1 | 0.0 | A0A1U7YCR1_NICSY; NAC domain-containing protein 21/22-like | ||||
STRING | XP_009800923.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-95 | NAC domain containing protein 74 |