PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009800766.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 238aa MW: 25806.4 Da PI: 8.7169

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009800766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.5	3.6e-41	57	156	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqql++l+ael+ XP_009800766.1 57 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQLQTLQAELN 151 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_009800766.1 152 AIRSE 156 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.991	56	157	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-41	57	154	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSRESLLLVV NRERLDEIGK KLKTEIDASS QLHMQQQMGR RQILGPAVGT TLNTITPCAA 60 CKLLRRRCAE ECPFSPYFSP HEPQKFAAVH KVFGASNVSK LLLEVPVGQR ADAANSLVYE 120 ANVRLRDPVY GCMGAISTLQ QQLQTLQAEL NAIRSEILRY KYREAANSLI ASISTSVADQ 180 LPQAPPTPPP PPPPLPSVVV VSSSSSTSSV SSLYTPPSSA GANFSATIHN NSISYFDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-46	50	164	4	118	LOB family transfactor Ramosa2.1
5ly0_B	7e-46	50	164	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	8e-80	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800766.1	1e-174	PREDICTED: LOB domain-containing protein 15-like isoform X1
Refseq	XP_016494817.1	1e-174	PREDICTED: LOB domain-containing protein 15-like isoform X1
Swissprot	Q8L5T5	1e-73	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1S4C0Z1	1e-173	A0A1S4C0Z1_TOBAC; LOB domain-containing protein 15-like isoform X1
TrEMBL	A0A1U7YFN4	1e-173	A0A1U7YFN4_NICSY; LOB domain-containing protein 15-like isoform X1
STRING	XP_009800766.1	1e-174	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-76	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]