PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800761.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 369aa    MW: 41315.6 Da    PI: 8.94
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.9e-32184237255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_009800761.1 184 PRMRWTSTLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 237
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.58E-15181237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-28182237IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23184237IPR006447Myb domain, plants
PfamPF002494.7E-7185236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNNK PSSSSSWKRS TSNSSNEDQE MDLGFWKRAL ESRNSSNNNN  60
NINNSSCFEL SLSSNINPKP NSSQYFHHLQ NTNTNFIRSL HQNQVLNPIR GVPVYNQNPI  120
FPYDNTNTTT TLPIPSSVSS FNYNHTISSS NSHSHFQSHL YHQNGLIRSR FMSRFPAKRS  180
MRAPRMRWTS TLHARFIHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT  240
TDKAAAGAAS SGQSEVFDNG SSGDNNSEEL VLDIQNSGKS ELSVQQGGRQ EKDNYRGLWS  300
NSSRESWQLH GNKKGDYPGN ISYLEKDNME AKCLSYEGIS TEVSSSTITE ASPKKPNLEF  360
TLGIMPNIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-17185239458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3827906e-54FQ382790.1 Vitis vinifera clone SS0ABG43YJ15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800761.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6162e-92KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1U7YFM90.0A0A1U7YFM9_NICSY; probable transcription factor KAN2 isoform X2
STRINGXP_009800760.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-65G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]