PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009800760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 370aa MW: 41443.7 Da PI: 8.94 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.2 | 6.9e-32 | 184 | 237 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_009800760.1 184 PRMRWTSTLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 237 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.58E-15 | 181 | 237 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-28 | 182 | 237 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 184 | 237 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-7 | 185 | 236 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNNK PSSSSSWKRS TSNSSNEDQE MDLGFWKRAL ESRNSSNNNN 60 NINNSSCFEL SLSSNINPKP NSSQYFHHLQ NTNTNFIRSL HQNQVLNPIR GVPVYNQNPI 120 FPYDNTNTTT TLPIPSSVSS FNYNHTISSS NSHSHFQSHL YHQNGLIRSR FMSRFPAKRS 180 MRAPRMRWTS TLHARFIHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT 240 TDKAAAGAAS SGQSEVFDNG SSGDNNSEEL VLDIQNSGKS ELSVQQGGRQ EKDNYRGLWS 300 NSSRESWQLH GNKKGDYPGN ISYLEQKDNM EAKCLSYEGI STEVSSSTIT EASPKKPNLE 360 FTLGIMPNIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-17 | 185 | 239 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382790 | 6e-54 | FQ382790.1 Vitis vinifera clone SS0ABG43YJ15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800760.1 | 0.0 | PREDICTED: probable transcription factor KAN2 isoform X1 | ||||
Swissprot | Q9C616 | 5e-92 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A1U7YPJ5 | 0.0 | A0A1U7YPJ5_NICSY; probable transcription factor KAN2 isoform X1 | ||||
STRING | XP_009800760.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2738 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 3e-65 | G2-like family protein |
Publications ? help Back to Top | |||
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