PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009800740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | E2F/DP | ||||||||
Protein Properties | Length: 426aa MW: 47003.1 Da PI: 4.3414 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.7 | 1.7e-27 | 106 | 171 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_009800740.1 106 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 171 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-29 | 104 | 173 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.63E-17 | 106 | 169 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.2E-35 | 106 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-24 | 108 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.13E-42 | 182 | 288 | No hit | No description |
SuperFamily | SSF144074 | 5.23E-30 | 184 | 288 | No hit | No description |
Pfam | PF16421 | 1.2E-29 | 187 | 286 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MQQPHHQQRE LPFTSSKPPL GDYHRFSTDP LQQPEAILVK STGVGAQITD SGYADVSSPM 60 QTPISGKVGK AQKVPRTSKA RSASQAATSN LGSPSGNNAT PVGPCRYDSS LGLLTKKFIN 120 LIKHAEDGIL DLNKAADTLE VQKRRIYDIT NVLEGIGLIE KKLKNRIQWK GLDVSRPGEV 180 DDSVTSLQAE VENMTIEERR LNEQTREMQE RLTDLCEDEN NQRWLLVTED DIKSLPCLQN 240 ETLIAIKAPH GTTLEVPDPD EAVDYPQRRY RIVLRSTMGP IDVYLVSQFE EKFEEINAVE 300 APSAMPSTSG FNENETATLP TEESGGVDGR IDEKENQSVC ADVGTSQDFA SGIMKIVSDV 360 DNEEDYWLLS DADVSITDIW RADSVLDWNE LNVIHEDYSI ANVSTPRAQT PPSSTTELPS 420 ANTTGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-26 | 101 | 172 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025347 | 0.0 | AB025347.1 Nicotiana tabacum mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800740.1 | 0.0 | PREDICTED: transcription factor E2FB-like isoform X3 | ||||
Swissprot | Q9FV71 | 1e-146 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | A0A1U7YPH5 | 0.0 | A0A1U7YPH5_NICSY; transcription factor E2FB-like isoform X3 | ||||
STRING | XP_009800726.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.2 | 1e-148 | E2F transcription factor 1 |
Publications ? help Back to Top | |||
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