PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009800215.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 752aa MW: 85138.5 Da PI: 5.8812 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.3 | 2.4e-116 | 381 | 749 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL+ cA+av++++ + a++lL+++++ +sp gd mqRla yf+ +L+ar+a+s++++y+al + ++s +++l+ ++l+ ++P+ k+s + XP_009800215.1 381 TLLILCAQAVAADNRRTANELLKQIRQCCSPMGDGMQRLAYYFADGLEARMAGSGTHIYRALITLPAS---AADVLKGYQLLLAACPFRKISIFF 472 689***********************************************************999999...89********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N+aI++ +e++++vHiiD++i+ G+QWpa++q L+sRp+gpp+lRiTg++ p +g + ++eetg+rL+++A++++vpfefn+ +a+++e+++ XP_009800215.1 473 SNKAIMNLAENASTVHIIDIGIMWGFQWPAIIQRLSSRPGGPPKLRITGIDFPYPGfrPAVRVEETGRRLTNYAKSFNVPFEFNA-IAQKWETIK 566 ******************************************************9999***************************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 le+L++++gE l+Vn+ ++ +llde+v+++s+rd +L+l+++ +P+v+++ + +ns+ F +rf eal +ys+lfd+lea++pre +er+ + XP_009800215.1 567 LEDLKINNGEILVVNCLYRFRHLLDETVDVNSPRDVFLNLIRKSNPDVFILGIVNGAYNSPFFITRFREALFHYSSLFDMLEANIPREVHERMLI 661 *********************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+ +lgre++nv+ace aer+er e++++W++r+++aGF+++pl+e+++ a + ++++ + ++ ++++l++gWk+r +++S W+ XP_009800215.1 662 EKNMLGREAKNVIACEAAERIERPESYKQWQDRIMKAGFRQLPLDEEIMRMATERFKVYDKN-FVIDVDNEWLLQGWKGRIGYALSTWK 749 ********************************************************999966.*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.058 | 353 | 730 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-114 | 381 | 749 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 752 aa Download sequence Send to blast |
MKIDRGFMGL YEAGSAIKIE DEAQSFLPDP NLINNLRVSD NLVNNNHVDI SPFQSNTLVR 60 STAEEDYDFS DVVLKYINQM LMEEDIEEMS CMFQESAALR VTERSFYEVI GEEYPPPPNL 120 EKLSDLGQNG YNSRERSGFY YSGNDGRDGI LCPNWNLDLG GYDVSQVPRF LDGVALRSTS 180 WSPHSSSSTV PDVLGDSPVS TLRIPDIFCD SESIMQFKKG VEEASKFIPR GNSLFADVRY 240 NVVGGEQNEE RNDALVKVEK YGERQSPERS RGKKNPLQED VVDLTEERNN KQSAVFSEST 300 VRSEMFDRVL LCSAGKNESA LRESWQTIPR RNVLQNGVSK GSNGKKSQGN KQGNKQDVVE 360 LSKNSQAKKQ GGKRDVVDLG TLLILCAQAV AADNRRTANE LLKQIRQCCS PMGDGMQRLA 420 YYFADGLEAR MAGSGTHIYR ALITLPASAA DVLKGYQLLL AACPFRKISI FFSNKAIMNL 480 AENASTVHII DIGIMWGFQW PAIIQRLSSR PGGPPKLRIT GIDFPYPGFR PAVRVEETGR 540 RLTNYAKSFN VPFEFNAIAQ KWETIKLEDL KINNGEILVV NCLYRFRHLL DETVDVNSPR 600 DVFLNLIRKS NPDVFILGIV NGAYNSPFFI TRFREALFHY SSLFDMLEAN IPREVHERML 660 IEKNMLGREA KNVIACEAAE RIERPESYKQ WQDRIMKAGF RQLPLDEEIM RMATERFKVY 720 DKNFVIDVDN EWLLQGWKGR IGYALSTWKS AC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-54 | 386 | 748 | 26 | 378 | Protein SCARECROW |
5b3h_A | 5e-54 | 386 | 748 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-54 | 386 | 748 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800215.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Refseq | XP_009800217.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Refseq | XP_016458639.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Refseq | XP_016458640.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1S3Z2I6 | 0.0 | A0A1S3Z2I6_TOBAC; scarecrow-like protein 14 | ||||
TrEMBL | A0A1U7Y7W1 | 0.0 | A0A1U7Y7W1_NICSY; scarecrow-like protein 14 | ||||
STRING | XP_009800215.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|