PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009800214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 448aa MW: 50811.8 Da PI: 10.2441 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 383 | 3.6e-117 | 75 | 445 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av+ ++++ a++lL+++++ +sp gd mqRla yf+ +L+ar+a+s++++y+al +++ s +++l+ ++l+ ++P+ k+s XP_009800214.1 75 LRTLLTLCAQAVAVENQRTANELLKQIRQSSSPMGDGMQRLAYYFADGLEARMAGSGTHIYRALITRPVS---AADVLKGYQLLLAACPFRKISS 166 5789**************************************************************9999...99******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N+aI++ +e++++vHiiD++i+ G+QWpaL+q L+sRp+gpp+lRiTg++ p++g + ++eetg+rLa++A++++vpfefn+ +a+++e+ XP_009800214.1 167 FFSNKAIMNLAENASKVHIIDIGIMWGFQWPALIQRLSSRPGGPPKLRITGIDFPHPGfrPAVRVEETGRRLANYAKSFNVPFEFNA-IAQKWET 260 ********************************************************9999***************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L++++gE+ +Vn+ ++ +llde+v+++s+r+ vL+l+ +l+P+v+++ + +n++ F +rf eal +ys+lfd+lea++pre +er+ XP_009800214.1 261 IKLEDLKINNGEVFVVNCLYRFRNLLDETVDVNSPRNVVLNLIGKLNPDVFILGIVNGAYNAPFFITRFREALFHYSSLFDMLEANIPREVHERM 355 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ +lgre++nv+ace aer+er et+++W+ r+++aGF+++pl+e+++ a + ++++ + ++ +s++l++gWk+r +++S W+ XP_009800214.1 356 LIEKNILGREAMNVIACEAAERIERPETYKQWQVRIMKAGFRQLPLDEEIMRMATERFKVYDKN-FVIDVDSEWLLQGWKGRIGYALSTWK 445 **********************************************************999966.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.603 | 49 | 426 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-114 | 75 | 445 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MFDRVLLCSA GKIESALRKT WQTISRRNAL ENGVSKGSNG KKSQGKKQGS KRDVVELNKN 60 SQAKKQGGKR DVVDLRTLLT LCAQAVAVEN QRTANELLKQ IRQSSSPMGD GMQRLAYYFA 120 DGLEARMAGS GTHIYRALIT RPVSAADVLK GYQLLLAACP FRKISSFFSN KAIMNLAENA 180 SKVHIIDIGI MWGFQWPALI QRLSSRPGGP PKLRITGIDF PHPGFRPAVR VEETGRRLAN 240 YAKSFNVPFE FNAIAQKWET IKLEDLKINN GEVFVVNCLY RFRNLLDETV DVNSPRNVVL 300 NLIGKLNPDV FILGIVNGAY NAPFFITRFR EALFHYSSLF DMLEANIPRE VHERMLIEKN 360 ILGREAMNVI ACEAAERIER PETYKQWQVR IMKAGFRQLP LDEEIMRMAT ERFKVYDKNF 420 VIDVDSEWLL QGWKGRIGYA LSTWKAAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-56 | 82 | 444 | 26 | 378 | Protein SCARECROW |
5b3h_A | 6e-56 | 82 | 444 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-56 | 82 | 444 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800214.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1U7YLT7 | 0.0 | A0A1U7YLT7_NICSY; scarecrow-like protein 14 | ||||
STRING | XP_009800214.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-179 | GRAS family protein |
Publications ? help Back to Top | |||
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