PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800099.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 226aa    MW: 26135.5 Da    PI: 10.2049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800099.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.9e-121861548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++eE  +l    +++G ++W+  +++ g+ R++k+c++rw +yl
   XP_009800099.1 18 SEEEYNKLRAFLEKHGHPNWRQLPKYAGLMRCGKSCRLRWMNYL 61
                     79****************************************97 PP
2Myb_DNA-binding50.74e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ + eE+el+++++++lG++ W++Ia++++ gR+++++k+ w+ +
   XP_009800099.1  67 KGNYSLEEEELIIKLHNELGNR-WSAIAAKFP-GRSDNDIKNQWHAH 111
                      7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.324961IPR017930Myb domain
SuperFamilySSF466898.03E-2612108IPR009057Homeodomain-like
SMARTSM007179.0E-71363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-181868IPR009057Homeodomain-like
PfamPF002492.6E-101861IPR001005SANT/Myb domain
CDDcd001671.31E-71861No hitNo description
PROSITE profilePS5129422.5962116IPR017930Myb domain
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002496.9E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2469116IPR009057Homeodomain-like
CDDcd001675.19E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRTPSIEKN GRKRGARSEE EYNKLRAFLE KHGHPNWRQL PKYAGLMRCG KSCRLRWMNY  60
LRPGLKKGNY SLEEEELIIK LHNELGNRWS AIAAKFPGRS DNDIKNQWHA HLKKRVNTNT  120
NSSISTEQFT ESSLSVESQN DHSSNYKVSE HEADNDMKEL SSASTDPIDR IFCSNFAANV  180
LRVLIKWNGV DRRRSYQVNG STFKPQLSRT TSIFLQLLLD KTHCLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-22141187110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800099.11e-170PREDICTED: myb-related protein Myb4-like
RefseqXP_016470389.11e-170PREDICTED: myb-related protein Myb4-like
SwissprotQ9LTC41e-50MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A1S4A1B51e-168A0A1S4A1B5_TOBAC; myb-related protein Myb4-like
TrEMBLA0A1U7YLH91e-168A0A1U7YLH9_NICSY; myb-related protein Myb4-like
STRINGXP_009800099.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.16e-53myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]