PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009799771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 34548.5 Da PI: 6.3441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.5e-18 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l+++++++G g+W++ a++ g++Rt+k+c++rw++yl XP_009799771.1 35 KGPWTVEEDFTLINYITLHGEGRWNSLAHCAGLKRTGKSCRLRWLNYL 82 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.4e-16 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_009799771.1 88 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 131 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.121 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 32 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-10 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 88 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-23 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.14E-7 | 108 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDHHHVKVGL SSERYGFCSN NNQQLIDEVT MDLRKGPWTV EEDFTLINYI TLHGEGRWNS 60 LAHCAGLKRT GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR 120 TDNEIKNYWR TRVQKHAKQL KCDVNSKQFK DTLRYLWMPR LIERIQAAKI PSNSCSEVTQ 180 QPIPNTDINE LELFQVANNN NNNNNNSNPS TSFVSENSSV TPLSDLSDCC YDYPVNQISS 240 ISPDYYQVNH SYRLCYEHSQ ATDQQNIQLW MESEDIFENL WNINEDMWPL EKQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 32 | 135 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799771.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_016494480.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 8e-88 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A1S4C007 | 0.0 | A0A1S4C007_TOBAC; transcription factor MYB108-like | ||||
TrEMBL | A0A1U7YCT6 | 0.0 | A0A1U7YCT6_NICSY; transcription factor MYB108-like | ||||
STRING | XP_009799771.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 3e-89 | myb domain protein 78 |
Publications ? help Back to Top | |||
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