PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009799769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 26915.8 Da PI: 7.9528 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 26 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_009799769.1 26 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 69 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.327 | 1 | 20 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-10 | 6 | 32 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.43E-21 | 6 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.246 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 26 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 33 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.43E-7 | 46 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
KITGLKRTGK SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD 60 NEIKNYWRTR VQKHAKQLKC DVNSKQFKDT LRYLWMPRLA ERIQASSNSA ATTTITTTNN 120 SNNNNNNHVS TSVTQENSSV TASSENSMGT QVSPVSDISD CCYNNYPINQ NDYGELLISP 180 TGYFQNGALD FRTVDYNNQQ NMSQWMEGTE DVSDNLWNIE DMLFLQQQLN NDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-17 | 7 | 73 | 40 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 2e-43 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 2e-43 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799769.1 | 1e-174 | PREDICTED: transcription factor MYB108-like, partial | ||||
Swissprot | Q2QZJ8 | 9e-67 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A1U7YKK3 | 1e-172 | A0A1U7YKK3_NICSY; transcription factor MYB108-like | ||||
STRING | XP_009799769.1 | 1e-173 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-60 | myb domain protein 78 |
Publications ? help Back to Top | |||
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