PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799760.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 353aa MW: 40179.2 Da PI: 9.5494

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44	2.7e-14	3	49	4	50
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 e++ n++ t+ R++ i K ELS+LCd++ + ii s++g+l++++ XP_009799760.1 3 EENQNKKKTYQVRKECIKRKTMELSTLCDIKCCTIITSPQGELQTWP 49 67889999**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.876	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.36E-14	3	70	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.6E-10	3	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF53098	5.31E-8	152	268	IPR012337	Ribonuclease H-like domain
CDD	cd06222	5.91E-19	156	268	No hit	No description
Pfam	PF13456	1.7E-13	156	269	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAEENQNKKK TYQVRKECIK RKTMELSTLC DIKCCTIITS PQGELQTWPE NLDAVKQVLN 60 LYTKTLSPNK KANEELSEEE IDILTLVESK LDAVNNRIRY LENKNAGFVR KKVNVKFTTQ 120 QATEFSYLAA SHHKGKKRTF GNLHWNPPKA NLYKFNTDGA HSTTADRIGG IIRNSNVEWI 180 LSFSRTVPKG TSVSAELHVL LTGLKLVHEY NLQPLEVDAK EIVKILQINN ISFANMLKDC 240 RYLLNQLGNP VVQHAYKEQN RVANQLAKAG KYFATKYVPC VYATVPVFVK QVSEDDRKSL 300 LDSVPSKETF PILCRLGEKP DSDVALVLLR GFWGIGDWLD RVRHSFYVYG VVL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAEENQNKKK TYQVRKECIK RKTMELSTLC DIKCCTIITS PQGELQTWPE NLDAVKQVLN  60
LYTKTLSPNK KANEELSEEE IDILTLVESK LDAVNNRIRY LENKNAGFVR KKVNVKFTTQ  120
QATEFSYLAA SHHKGKKRTF GNLHWNPPKA NLYKFNTDGA HSTTADRIGG IIRNSNVEWI  180
LSFSRTVPKG TSVSAELHVL LTGLKLVHEY NLQPLEVDAK EIVKILQINN ISFANMLKDC  240
RYLLNQLGNP VVQHAYKEQN RVANQLAKAG KYFATKYVPC VYATVPVFVK QVSEDDRKSL  300
LDSVPSKETF PILCRLGEKP DSDVALVLLR GFWGIGDWLD RVRHSFYVYG VVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799760.1	0.0	PREDICTED: uncharacterized protein LOC104245789, partial
TrEMBL	A0A1U7YLP8	0.0	A0A1U7YLP8_NICSY; uncharacterized protein LOC104245789
STRING	XP_009799760.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26880.1	1e-09	AGAMOUS-like 26