PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799693.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 246aa MW: 26893.8 Da PI: 4.6308

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.2e-18	66	115	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g XP_009799693.1 66 VYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIKG 115 59**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.1E-36	66	129	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.525	66	123	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-21	66	124	IPR016177	DNA-binding domain
Pfam	PF00847	7.2E-13	66	115	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.2E-32	66	124	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	67	78	IPR001471	AP2/ERF domain
CDD	cd00018	4.00E-32	67	125	No hit	No description
PRINTS	PR00367	1.9E-10	89	105	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAEVEVPCPE TESSSSNTSS SSSSLSSESM HNSVFDSSKE LPEDKKPPTK RKRETINNEN 60 SVQNQVYRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE MAARAHDVAA LSIKGNSAIL 120 NFPNLIDSLP RPVSNLPRDV QAAAAKAAAM NLNLTSLSSS SSSSSSTTIT SAGSEELGEI 180 IELPNLEESE ETKTELRLSD SVEGWLYSPW WASTDSDFCG YFLEQSASAT GESLIPSSFE 240 ILKWGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-19	67	124	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	3e-79	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799693.1	1e-177	PREDICTED: ethylene-responsive transcription factor TINY-like
Refseq	XP_016493944.1	1e-177	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	7e-55	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S4BYT8	1e-176	A0A1S4BYT8_TOBAC; ethylene-responsive transcription factor TINY-like
TrEMBL	A0A1U7Y9A7	1e-176	A0A1U7Y9A7_NICSY; ethylene-responsive transcription factor TINY-like
STRING	XP_009799693.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	6e-51	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]