PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799672.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 300aa MW: 32886.3 Da PI: 9.9605

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ ++ ++G+g W+tI + R+ ++k++w++ XP_009799672.1 5 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 56 79*********************************66*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.941	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.18E-15	2	74	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-13	4	57	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	4.12E-18	6	57	No hit	No description
PROSITE profile	PS51504	23.25	114	188	IPR005818	Linker histone H1/H5, domain H15
SMART	SM00526	7.2E-12	118	183	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.31E-15	120	196	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.7E-14	121	193	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	2.1E-7	125	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGAPKQKWTS EEEAALKAGI LKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMTVMA 60 NGWSSREQAR LAVKRTKQAP RQDGSPVADT TTAESDEEAA EAQAATTSSG SPQIHGSRKA 120 MIRLDNLIME AISSLKEPGG SNKTTIAAYI EDQYWAPPNF IRLLSGKLKY LTATGKLIKI 180 KRKYRVAPTS TPSDRRRNLS SPFLDSRQRI FSKVDRDYMD MLSTSQIDLE IANKMRNMTP 240 QEAAAAAAQA VAEAEAAIAE AEEAARDAEA HEADAEAAKA FSDATKTLHG RSAPRMIIRA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-100	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799672.1	0.0	PREDICTED: telomere repeat-binding factor 1-like isoform X1
Refseq	XP_009799673.1	0.0	PREDICTED: telomere repeat-binding factor 1-like isoform X1
Refseq	XP_009799674.1	0.0	PREDICTED: telomere repeat-binding factor 1-like isoform X1
Refseq	XP_016476890.1	0.0	PREDICTED: telomere repeat-binding factor 1-like isoform X2
Swissprot	Q8VWK4	2e-98	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A1S4AJL3	0.0	A0A1S4AJL3_TOBAC; telomere repeat-binding factor 1-like isoform X2
TrEMBL	A0A1U7YKA9	0.0	A0A1U7YKA9_NICSY; telomere repeat-binding factor 1-like isoform X1
STRING	XP_009799672.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2864	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	8e-90	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]