PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799286.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 429aa MW: 46577.5 Da PI: 6.5566

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	230	288	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ XP_009799286.1 230 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTETTTLSAQLTLLQRDTNGLTAEN 288 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-15	226	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.978	228	291	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	230	281	No hit	No description
Pfam	PF00170	5.1E-9	230	284	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-9	230	284	No hit	No description
CDD	cd14703	6.45E-19	231	280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MDKSSSHTVG SLPPLGRYSL FSPPGGSSNA KLEQSGLANL PPLGPGNASE SGHFGHGLSA 60 DSSRFSHDIS RMPDNPPKKF GHRRAHSEIL TLPDDISFDS DLGVVGGLDG PSLSDETEED 120 FLSMYLDMDK FNSSSVSSDF QVGESSSSAA AASGSLQIPA MASAASGSDN VGPTASAKPR 180 VRHQHSQSMD GSTTIKPEML MSGIDEASPL ETKKATSAAK LAELALVDPK RAKRIWANRQ 240 SAARSKERKM RYIAELERKV QTLQTETTTL SAQLTLLQRD TNGLTAENSE LKLRLQTMEQ 300 QVHLQDALND ALKEEIQHLK VLTGQGIANG GPMMNFPASF GGNQQFYSNN HAMHTLLAAQ 360 QLQQLQIHSH KQQHQFQQHQ LHQFQQQQQL QHQQQLQEQL HQAGDMNSRS SLSSPQNDNG 420 SDTSAISKD

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MDKSSSHTVG SLPPLGRYSL FSPPGGSSNA KLEQSGLANL PPLGPGNASE SGHFGHGLSA  60
DSSRFSHDIS RMPDNPPKKF GHRRAHSEIL TLPDDISFDS DLGVVGGLDG PSLSDETEED  120
FLSMYLDMDK FNSSSVSSDF QVGESSSSAA AASGSLQIPA MASAASGSDN VGPTASAKPR  180
VRHQHSQSMD GSTTIKPEML MSGIDEASPL ETKKATSAAK LAELALVDPK RAKRIWANRQ  240
SAARSKERKM RYIAELERKV QTLQTETTTL SAQLTLLQRD TNGLTAENSE LKLRLQTMEQ  300
QVHLQDALND ALKEEIQHLK VLTGQGIANG GPMMNFPASF GGNQQFYSNN HAMHTLLAAQ  360
QLQQLQIHSH KQQHQFQQHQ LHQFQQQQQL QHQQQLQEQL HQAGDMNSRS SLSSPQNDNG  420
SDTSAISKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799286.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-147	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1U7YBF9	0.0	A0A1U7YBF9_NICSY; probable transcription factor PosF21
STRING	XP_009799286.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3965	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-124	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]