PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799222.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 312aa    MW: 33679.1 Da    PI: 6.5091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15226261134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp g+++LCnaCGl ++ kg
  XP_009799222.1 226 CRHCGISSkfTPMMRRGPAGPRSLCNACGLTWANKG 261
                     *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.9E-1190125IPR010399Tify domain
PROSITE profilePS5132013.63590125IPR010399Tify domain
PfamPF062006.7E-1293123IPR010399Tify domain
PfamPF062033.3E-16157199IPR010402CCT domain
PROSITE profilePS5101713.245157199IPR010402CCT domain
SMARTSM004011.7E-8220273IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.774220268IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-11222271No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14224267IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-13225268No hitNo description
PfamPF003201.5E-13226261IPR000679Zinc finger, GATA-type
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MYRRETMNGT VHQERHQHTH FAEGKDDDDD VDVDGGGGGG ESIDDPSHHI RYDHNYHHAL  60
HNGGAGATME EAAALNVVEG VAHNALYVPG IGSSNQLTLS FRGQVFVYPD VSPEKVQAVM  120
LLLDGYEVPT GTAAVDVASQ SHWASSEGPG RLNQPQRAAS LSRFREKRKE RCFDKKIRYT  180
VRKEVALRMQ RKKGQFTSSK SISDEAGSSS AEGNVGSSQE EPETSCRHCG ISSKFTPMMR  240
RGPAGPRSLC NACGLTWANK GILRDLSKVS TAGAPDHTVK SSEQSNDEAN GSDAMAAAGI  300
ITSDDENTVL PR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612270.0GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799222.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL77e-75GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1U7Y5280.0A0A1U7Y528_NICSY; GATA transcription factor 24-like
STRINGXP_009799222.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-78ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]