PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009799135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 582aa MW: 65045.4 Da PI: 7.1113 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 5.8e-14 | 215 | 274 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+ ++ a++k++g XP_009799135.1 215 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARSYDLAALKYWG 274 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 50.7 | 4.4e-16 | 319 | 368 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+fgt+eeAa+a++ a+ k++g XP_009799135.1 319 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDVAAIKFRG 368 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.26E-21 | 215 | 284 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-16 | 215 | 284 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-11 | 215 | 274 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 216 | 282 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-15 | 216 | 282 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-29 | 216 | 288 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 217 | 228 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 317 | 377 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.20E-23 | 317 | 376 | No hit | No description |
PROSITE profile | PS51032 | 18.979 | 318 | 376 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-17 | 318 | 376 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-31 | 318 | 382 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-11 | 319 | 368 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 358 | 378 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MKEWDKLRDS QTEGRKHVQE LIHLAQKFKA QHIVKEICKN IMGSMNSNNW LSFHLSPHLQ 60 TTESHSLGSV AETIDNPFQN QASTRSSAEW NFTDTQGGNE VPKVADFFGV SKSGHESELV 120 SYSKIQANDN SDYPFPNTNL MPMQNVTYDL QENAWNMQSL TLSMGSGKSS TSETSASPNA 180 NATARASSTS GENSNTSIVE AAPRRTSDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR 240 EGQSRKGRQV YLGGYDKEEK AARSYDLAAL KYWGTSTTTN FPINNYEKEV EEMKHMTRQE 300 SIASIRRKST GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFG TEEEAAEAYD 360 VAAIKFRGLC AVTNFEMNRY DVKAILESNT LPIGGGAAKR LKEAQAFESS RKRDQEMISL 420 NSTTTFHQYE NSNNSGVAFQ TYPLMQQQPL LSTLQNQDFS SQFHHSYIQT QLQLHHQQSH 480 QMYNDYFQSN NPVFLHGLMN NMGSSSSVMN NNGGSSSGSY SNGGYLDNTT GIGMTSNSPS 540 GGGSAHEEIA MVKVDYDMPY TGWSGESSVQ ESNPGAFTMW ND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799135.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 isoform X1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A1U7YJY1 | 0.0 | A0A1U7YJY1_NICSY; AP2-like ethylene-responsive transcription factor PLT2 isoform X1 | ||||
STRING | XP_009799135.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |