PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009799111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 392aa MW: 43775.6 Da PI: 5.1961 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.3 | 1.3e-31 | 55 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lel.eevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+P+d el+ eyL++k+ + +++ +e+i+++d i++++P++Lp +k++ ++++fF + ++y+tgkrk+r+ + XP_009799111.1 55 LPVGVKFDPSDVELL-EYLEEKCGVGNskqHKFiDEFIPTLDiyegICYTHPENLP-GAKKDGSSVHFFYRITNAYSTGKRKRRKisdennliKE 147 799************.******877663343331335777775555889*******.556778899******************86888888766 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+k v++ +g ++g+kk++v+y++ + k ekt+Wvmh+y+l XP_009799111.1 148 HVRWHKTGKTKVVMD-NGLQKGCKKVMVLYQNtkKGLKQEKTHWVMHQYHL 197 999***********9.999***********6522556788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-37 | 40 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.103 | 55 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-14 | 56 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGRSWLIDGR GLARKIKNAS APAAHQIKDC GAKRQCPNCH YCIDNNDVSQ DWPGLPVGVK 60 FDPSDVELLE YLEEKCGVGN SKQHKFIDEF IPTLDIYEGI CYTHPENLPG AKKDGSSVHF 120 FYRITNAYST GKRKRRKISD ENNLIKEHVR WHKTGKTKVV MDNGLQKGCK KVMVLYQNTK 180 KGLKQEKTHW VMHQYHLGTD EDEKEGEYVV SKIFYQQQKQ SVKPNDSRVN EEASAGANHT 240 GPTTPKTVTP NPPRAGETPS CDDFIDDSLP FSPDQEVEVA KEPGQSSDAT VKSEMEYPTC 300 LAGESQGADA NDVDNSLLCD ELLASYLDSF EHNLGSSTEY THNTSHLPQG NGNTTCGISE 360 LDNLELDTPP DFQLADLPFG SQESIFSWLD RQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215373 | 1e-169 | AC215373.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0064B17, complete sequence. | |||
GenBank | AC215453 | 1e-169 | AC215453.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0034H10, complete sequence. | |||
GenBank | HG975514 | 1e-169 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799111.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Refseq | XP_016444166.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 2e-86 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3XW50 | 0.0 | A0A1S3XW50_TOBAC; NAC domain-containing protein 8-like | ||||
TrEMBL | A0A1U7YAY5 | 0.0 | A0A1U7YAY5_NICSY; NAC domain-containing protein 8-like | ||||
STRING | XP_009799111.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8175 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 2e-95 | NAC domain containing protein 44 |