PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009798928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 31650.2 Da PI: 6.8019 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.2e-15 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl XP_009798928.1 20 KGEWSPEEDQKLKSYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 67 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 41.9 | 2.3e-13 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e ++ ++lG++ W+ Ia++++ gRt++++k++++++l XP_009798928.1 73 RGPFSIEERETVIKTYQELGNR-WSEIAARLP-GRTDNEVKNFFHTHL 118 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.075 | 15 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.56E-28 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-13 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-9 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 21.616 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 71 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-12 | 73 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.94E-7 | 75 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
MPRVPPQQQQ KSTNMGEIKK GEWSPEEDQK LKSYIMRYGI WNWSHMPKFA GLSRTGKSCR 60 LRWMNYLRPD VKRGPFSIEE RETVIKTYQE LGNRWSEIAA RLPGRTDNEV KNFFHTHLKK 120 HLGVKNDAPS KTKARSNKRA VKKTKGNERT NADKRSPDVS SSDSSSIITF EENQMMDVTM 180 NSSQTYQDWY NIVDQLNIEM ETRPVILESN PDDGTYNSNG QQLHDQFECS HDISEYYSSF 240 DSIDQFNMSS FWFGELWDAE TSDFLRDVIT N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 17 | 120 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 6e-38 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 6e-38 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798928.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Refseq | XP_016461256.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A1S3ZA10 | 0.0 | A0A1S3ZA10_TOBAC; transcription factor WER-like | ||||
TrEMBL | A0A1U7Y734 | 0.0 | A0A1U7Y734_NICSY; myb-related protein Myb4-like | ||||
STRING | XP_009798928.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 8e-49 | myb domain protein 14 |