PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798928.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 271aa    MW: 31650.2 Da    PI: 6.8019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.2e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
   XP_009798928.1 20 KGEWSPEEDQKLKSYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 67
                     799*****************99************************97 PP

2Myb_DNA-binding41.92.3e-1373118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE e  ++  ++lG++ W+ Ia++++ gRt++++k++++++l
   XP_009798928.1  73 RGPFSIEERETVIKTYQELGNR-WSEIAARLP-GRTDNEVKNFFHTHL 118
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0751567IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-221770IPR009057Homeodomain-like
SuperFamilySSF466893.56E-2818114IPR009057Homeodomain-like
SMARTSM007179.8E-131969IPR001005SANT/Myb domain
PfamPF002491.9E-132067IPR001005SANT/Myb domain
CDDcd001672.00E-92267No hitNo description
PROSITE profilePS5129421.61668122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2371122IPR009057Homeodomain-like
SMARTSM007171.4E-1172120IPR001005SANT/Myb domain
PfamPF002495.7E-1273118IPR001005SANT/Myb domain
CDDcd001672.94E-775118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPRVPPQQQQ KSTNMGEIKK GEWSPEEDQK LKSYIMRYGI WNWSHMPKFA GLSRTGKSCR  60
LRWMNYLRPD VKRGPFSIEE RETVIKTYQE LGNRWSEIAA RLPGRTDNEV KNFFHTHLKK  120
HLGVKNDAPS KTKARSNKRA VKKTKGNERT NADKRSPDVS SSDSSSIITF EENQMMDVTM  180
NSSQTYQDWY NIVDQLNIEM ETRPVILESN PDDGTYNSNG QQLHDQFECS HDISEYYSSF  240
DSIDQFNMSS FWFGELWDAE TSDFLRDVIT N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241712024126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754426e-38HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755156e-38HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798928.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_016461256.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A1S3ZA100.0A0A1S3ZA10_TOBAC; transcription factor WER-like
TrEMBLA0A1U7Y7340.0A0A1U7Y734_NICSY; myb-related protein Myb4-like
STRINGXP_009798928.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-49myb domain protein 14