PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009798614.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 754aa MW: 86012.4 Da PI: 7.7073

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009798614.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.8	2.4e-30	64	152	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+s+ ++s+r++ i +r++vCskeg++ + +++ +k rr+r ++r+gCka+l+vkk+ +gkw +tk++++HnHel+p XP_009798614.1 64 FYNSYARRVGFGTRVSAYRRSRRDNIISSRQLVCSKEGFNPRPDEQ-HKPRRQRIVSRVGCKAHLTVKKQASGKWAITKFVKDHNHELVP 152 9*************************************999999.99*************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-27	64	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-28	270	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.09	554	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-10	556	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.4E-8	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MESQPLNLEN DAMEFDVGSG EEEEEEDNYK HSSSGLDSRD QCSSSDLEPY EGMEFESEQA 60 ARIFYNSYAR RVGFGTRVSA YRRSRRDNII SSRQLVCSKE GFNPRPDEQH KPRRQRIVSR 120 VGCKAHLTVK KQASGKWAIT KFVKDHNHEL VPPDQVHLLR SHRHVSGPAR SLIDTLQAAG 180 LGATRVMSVL IKQSGGINNV GFTKSDCQNY MNQTRQRTLG TGAHYILEYL KQKQAEDPGF 240 FYVVQGGPSG NIFWADSTSR MNYSYFGDTV TFDTTYRTHR FRVPFAPFIG VNHHCQPVLF 300 GCALLLNESE SSFIWLFQNW LAAMSGRHPV SITTDHDRII RSAIADVFPG ARHRFCKSNI 360 FRQVQERLSH SLQLFPIFEA EFQKCVNSPE TIEEFELCWE SLLGRYNLKD DEWLHSMYDA 420 RQHWVPIYLR DTFFGETSIA KTSDTTNSFF DGYIDASTNI HILMTRYEKA TASRHEKEVK 480 AENDTIYISP ILKTPSPMEK QAANLYTREI FLMFQRELME TLAYPATVIN DTRPDVVYQV 540 AKFGEDHKVH YVQYNVFEKK ASCSCQLFAF SGIPCKHILA VFRVKNILRL PSHYVLKRWT 600 RKAKSEVVLD EDDLGLPSSH NESFTARFEK LSLEATKYVK EGVDSENVYK VAMDALRGAS 660 KKVAAAMCST PAAPKSLDMN KAKEFNLNGN QAGCGDSCLV SQDEKILELT TAVVNATGIC 720 EAYRAKLLSI LREMEEQKLR ISLKIQSMRF NQMT

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MESQPLNLEN DAMEFDVGSG EEEEEEDNYK HSSSGLDSRD QCSSSDLEPY EGMEFESEQA  60
ARIFYNSYAR RVGFGTRVSA YRRSRRDNII SSRQLVCSKE GFNPRPDEQH KPRRQRIVSR  120
VGCKAHLTVK KQASGKWAIT KFVKDHNHEL VPPDQVHLLR SHRHVSGPAR SLIDTLQAAG  180
LGATRVMSVL IKQSGGINNV GFTKSDCQNY MNQTRQRTLG TGAHYILEYL KQKQAEDPGF  240
FYVVQGGPSG NIFWADSTSR MNYSYFGDTV TFDTTYRTHR FRVPFAPFIG VNHHCQPVLF  300
GCALLLNESE SSFIWLFQNW LAAMSGRHPV SITTDHDRII RSAIADVFPG ARHRFCKSNI  360
FRQVQERLSH SLQLFPIFEA EFQKCVNSPE TIEEFELCWE SLLGRYNLKD DEWLHSMYDA  420
RQHWVPIYLR DTFFGETSIA KTSDTTNSFF DGYIDASTNI HILMTRYEKA TASRHEKEVK  480
AENDTIYISP ILKTPSPMEK QAANLYTREI FLMFQRELME TLAYPATVIN DTRPDVVYQV  540
AKFGEDHKVH YVQYNVFEKK ASCSCQLFAF SGIPCKHILA VFRVKNILRL PSHYVLKRWT  600
RKAKSEVVLD EDDLGLPSSH NESFTARFEK LSLEATKYVK EGVDSENVYK VAMDALRGAS  660
KKVAAAMCST PAAPKSLDMN KAKEFNLNGN QAGCGDSCLV SQDEKILELT TAVVNATGIC  720
EAYRAKLLSI LREMEEQKLR ISLKIQSMRF NQMT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798613.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_016475931.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S4AH04	0.0	A0A1S4AH04_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U7Y656	0.0	A0A1U7Y656_NICSY; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_009798613.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]