PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798338.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 417aa    MW: 47239.6 Da    PI: 4.8024
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.3e-091760340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + +k++++fC  ++ +lC++C ++ H+       H++v
  XP_009798338.1 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 60
                    578*****************************667888888876 PP
2CCT67.63.3e-23359402144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  XP_009798338.1 359 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 402
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.8E-121562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9641562IPR000315B-box-type zinc finger
PfamPF006431.1E-71760IPR000315B-box-type zinc finger
CDDcd000214.86E-111862No hitNo description
PfamPF062037.9E-18359401IPR010402CCT domain
PROSITE profilePS5101716.043359401IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMTSERKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV  60
RLETSSNKST DTKFVDQTAS QPSWHQGFTR KARTPRNGKN KSTQIGQRKK DEENMVPEMG  120
SEENSPDDEN EEQLLYRVPV FDPFEAELCT VPNEVVDETT TINDLDILLN SEDACDDLGI  180
PKFLSSEIEL AEFAADVESL LGEEFRVVAE EEDEEQSRLI SGVVEDNKAI KIEVEDEEMR  240
AVVACHLDPE LDMAREALNW DFEYEETVEQ KVNMAAATEF VPSAECGGSK ADAKRRMLLR  300
LNYEEVISAW PNQSSPWTNG IRPHFNPDDC WPDFLETCIG EGGHQPYGGG NVRGGDGGRE  360
ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRLKGRFVK RTTSFSAPGF PYLMNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369385RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798338.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A1U7Y5C70.0A0A1U7Y5C7_NICSY; zinc finger protein CONSTANS-LIKE 6-like
STRINGXP_009798338.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.16e-81B-box type zinc finger protein with CCT domain