PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798155.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 356aa    MW: 39100.6 Da    PI: 6.5132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-21168218256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  XP_009798155.1 168 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 218
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-34167227No hitNo description
Gene3DG3DSA:3.30.730.102.5E-32168226IPR001471AP2/ERF domain
PROSITE profilePS5103223.235168225IPR001471AP2/ERF domain
SMARTSM003805.8E-38168231IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-23168226IPR016177DNA-binding domain
PfamPF008471.8E-14169218IPR001471AP2/ERF domain
PRINTSPR003673.4E-11169180IPR001471AP2/ERF domain
PRINTSPR003673.4E-11191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MASAIDIYSN NSSVFSDPLS EELMKALEPF MKGASCSSSI SPSLSPSSSS SPSTSSSSSS  60
CFYPFGEPNL YTDFCTIPSL SFNPMGHVAE TGSIGLNHLT PSQIFQIQAQ IQFQNQQQQQ  120
LLLQQQQSLG LLPTTPTYSK NLNSMNYLGL KPVPMKQSGG AIQKPTKLYR GVRQRHWGKW  180
VAEIRLPKNR TRLWLGTFDT AEEAALAYDK AAYKLRGEFA RLNFPHLRHQ LNNELSDFKP  240
LHSSVDAKLQ AICQNLANSD GLSSNNNTDS KPRKSKKAAS KLNSGSVQDC PENVNVKIEA  300
TSSSSPTQSE ESSSSAVTSS PESDITFLDF IEPSFDESEN FFLPKYPSVE IDWAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22167225160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN6494670.0FN649467.1 Nicotiana benthamiana mRNA for transcription factor DREB2a.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798155.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A1U7YH540.0A0A1U7YH54_NICSY; ethylene-responsive transcription factor RAP2-13-like
STRINGXP_009798155.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-48related to AP2 4