PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009798121.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 702aa MW: 79171.3 Da PI: 5.6186

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009798121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.8	2.6e-108	324	698	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cAea +s + + ++L+++++++sp gdp+ Rla +f++AL+ar a+ + ++++++ ++s + ++ l+a++++ ++P+ ++s++ XP_009798121.1 324 TSLLTRCAEAAASYNSKTFVEVLSKIRQHSSPFGDPTARLAYCFANALEARFAG--GGGVDTITTPKKSILSAADFLKAYQVYITACPFKRMSNI 416 689************************************************9..55556666666666789****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN+ I + ++++ +vHiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g +e++eetg+rL+++++++gvpfe+++ +ak+++d+ XP_009798121.1 417 FANKSIAKLTSEAPKVHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLENYCKRFGVPFEYKA-IAKKWDDI 510 ****************************************************9*************************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +le+L+++++E+++Vn+ ++l++++de+v ++ +r++vL+l+k+++P+ +v+ +a +n++ F +rf eal ++s+ fd++ea++ re+e XP_009798121.1 511 KLEHLNIEQDETVVVNCLYRLKNVPDETVLTNGnnnPRNAVLRLIKEINPHWFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMTREDEG 605 ***********************9977655669****************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ E+e++gr+i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +r+++ + + v+e+s+++++gWk+r ++++S+W+ XP_009798121.1 606 RMIFEQEVFGRDIMNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLNQDIVKEVKAKVRMFYHRDFLVDEDSNWMLQGWKGRIMYALSVWQ 698 ************************************************************999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.464	297	678	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.1E-106	324	698	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MNTNTYFPSV DHRSTDGLEC CHRFAMASTN LGNEFSSTDI HDVVFFSSSN GTSSNNDEVV 60 VEGGGGGGGC DQTVVESDYF DGVFKYIQQM LLEEEDDLES RPCMFQDCIA LQAAEKSFYD 120 ALTDNNNDDP TIVEHCSSTD FPVNHGFIST THCLQDDNFN HFLDQSDLIS DFDCSNTGIR 180 GNTPLNNNCQ VVAAANDDHR NIYYGVNSTN TNNQGGTSKS EGKKKHNRED CGESSNGPNS 240 KQFASNGAEE TEEKTHEEYY DKAVLCPDMN PAFYVEDSCD DGSRSSSENA AWDKQKSRHI 300 KQSKRGRPRG TKKGVKTNEV VDLTSLLTRC AEAAASYNSK TFVEVLSKIR QHSSPFGDPT 360 ARLAYCFANA LEARFAGGGG VDTITTPKKS ILSAADFLKA YQVYITACPF KRMSNIFANK 420 SIAKLTSEAP KVHIIDFGIL YGFQWPCIIH GISLRPGGPP KLKITGIDFP QPGFRPAERV 480 EETGRRLENY CKRFGVPFEY KAIAKKWDDI KLEHLNIEQD ETVVVNCLYR LKNVPDETVL 540 TNGNNNPRNA VLRLIKEINP HWFVHGIVNA MYNASFFTTR FREALFHFSS QFDMFEATMT 600 REDEGRMIFE QEVFGRDIMN VIACEGTERV ERPESYKQWS VRNQIAGFRQ LPLNQDIVKE 660 VKAKVRMFYH RDFLVDEDSN WMLQGWKGRI MYALSVWQPI HK

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MNTNTYFPSV DHRSTDGLEC CHRFAMASTN LGNEFSSTDI HDVVFFSSSN GTSSNNDEVV  60
VEGGGGGGGC DQTVVESDYF DGVFKYIQQM LLEEEDDLES RPCMFQDCIA LQAAEKSFYD  120
ALTDNNNDDP TIVEHCSSTD FPVNHGFIST THCLQDDNFN HFLDQSDLIS DFDCSNTGIR  180
GNTPLNNNCQ VVAAANDDHR NIYYGVNSTN TNNQGGTSKS EGKKKHNRED CGESSNGPNS  240
KQFASNGAEE TEEKTHEEYY DKAVLCPDMN PAFYVEDSCD DGSRSSSENA AWDKQKSRHI  300
KQSKRGRPRG TKKGVKTNEV VDLTSLLTRC AEAAASYNSK TFVEVLSKIR QHSSPFGDPT  360
ARLAYCFANA LEARFAGGGG VDTITTPKKS ILSAADFLKA YQVYITACPF KRMSNIFANK  420
SIAKLTSEAP KVHIIDFGIL YGFQWPCIIH GISLRPGGPP KLKITGIDFP QPGFRPAERV  480
EETGRRLENY CKRFGVPFEY KAIAKKWDDI KLEHLNIEQD ETVVVNCLYR LKNVPDETVL  540
TNGNNNPRNA VLRLIKEINP HWFVHGIVNA MYNASFFTTR FREALFHFSS QFDMFEATMT  600
REDEGRMIFE QEVFGRDIMN VIACEGTERV ERPESYKQWS VRNQIAGFRQ LPLNQDIVKE  660
VKAKVRMFYH RDFLVDEDSN WMLQGWKGRI MYALSVWQPI HK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-48	323	698	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798121.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A1U7Y860	0.0	A0A1U7Y860_NICSY; scarecrow-like protein 30
STRING	XP_009798121.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-154	GRAS family protein