PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009798071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 494aa MW: 54355.1 Da PI: 4.7886 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 209.4 | 1.9e-64 | 153 | 385 | 4 | 250 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +L++cAea+++++l+la+al++ ++ la ++ ++++++ yf L +++++ ++a e+s + ++e + +f+e+sP+lkf+h+ta XP_009798071.1 153 TLMACAEAIQQNNLNLADALVSDIKRLAVQQSGAVKKVVYYFDDTLDRTING-----MNAPYIVESS-Y-CTDE-LLQMYFYETSPYLKFAHFTA 239 79**************************************************.....4444444444.2.3333.33457*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 NqaIlea++ ++rvH+iDf+++qG QWp L+qaLa R + pp +R+Tg+g +++ e++ L ++Ae++g++fef+ ++a++l+d++ XP_009798071.1 240 NQAILEAFADSNRVHVIDFSLNQGSQWPVLMQALALRHGAPPAFRLTGIGL----PQHSFLEVRYMLVQLAEKIGLEFEFRGFLANSLTDVDAMI 330 ***************************************************....779999*******************************999 PP GRAS 194 Lrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 L++++ Ea+aVn++++ h+ +++++++e+ +L+++k+++Pk+v+ + + +ns XP_009798071.1 331 LSIRSsnVEAVAVNSIFEPHHAMSRPGAIEK----LLNTIKEMQPKIVTTIIKQEATNS 385 99888779***************99999999....*************98766555554 PP | |||||||
2 | GRAS | 76.1 | 6.6e-24 | 392 | 487 | 280 | 374 |
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++ + +++ gr+i n+v+c+g++r+erh tl++Wr +++++GF++v+l++++ +qa+ ll+ ++ +g vee++g l+l ++pL+++SaW XP_009798071.1 392 SRDSEMAEQYPGRQIHNAVTCKGSDRIERHDTLSQWRVKMNSVGFNSVRLNSNTCNQASKLLSLFHnRHGCGVEENDGFLMLSRDSQPLIATSAW 486 5556677777********************************************************999************************** PP GRAS 374 r 374 + XP_009798071.1 487 Q 487 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.54 | 124 | 466 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-62 | 153 | 385 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-21 | 392 | 487 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MSYRSEMSMD TTTEDGESFI SNTDAIINGT SDISALAESL ISGPNIPNSS WTSADDVQQQ 60 ISTAGGGGAA AADDMMIVSS GASSMLSNTN KQSEIMIFNV DFRAVAVCNN SDKIEEKGSA 120 ESSKRLECRF GLGSNIGGAV NEETSFRFVN IYTLMACAEA IQQNNLNLAD ALVSDIKRLA 180 VQQSGAVKKV VYYFDDTLDR TINGMNAPYI VESSYCTDEL LQMYFYETSP YLKFAHFTAN 240 QAILEAFADS NRVHVIDFSL NQGSQWPVLM QALALRHGAP PAFRLTGIGL PQHSFLEVRY 300 MLVQLAEKIG LEFEFRGFLA NSLTDVDAMI LSIRSSNVEA VAVNSIFEPH HAMSRPGAIE 360 KLLNTIKEMQ PKIVTTIIKQ EATNSEWTQS YSRDSEMAEQ YPGRQIHNAV TCKGSDRIER 420 HDTLSQWRVK MNSVGFNSVR LNSNTCNQAS KLLSLFHNRH GCGVEENDGF LMLSRDSQPL 480 IATSAWQLTP PTLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-39 | 157 | 486 | 26 | 378 | Protein SCARECROW |
5b3h_A | 5e-39 | 157 | 486 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-39 | 157 | 486 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798071.1 | 0.0 | PREDICTED: DELLA protein GAI-like | ||||
Refseq | XP_016438186.1 | 0.0 | PREDICTED: DELLA protein GAI-like | ||||
Swissprot | Q7Y1B6 | 1e-135 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A1S3XDY8 | 0.0 | A0A1S3XDY8_TOBAC; DELLA protein GAI-like | ||||
TrEMBL | A0A1U7Y811 | 0.0 | A0A1U7Y811_NICSY; DELLA protein GAI-like | ||||
STRING | XP_009798071.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12864 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 1e-122 | GRAS family protein |
Publications ? help Back to Top | |||
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