PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797803.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 380aa    MW: 43950.8 Da    PI: 9.7259
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.45.4e-1428107191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY+e+A+  GF ++k++s+k+   + i   ++ C  + k+++++          +++r +C+a+++  +e++g w++++++++HnH+l p
  XP_009797803.1  28 DFYKEHARLPGFCIVKRTSNKK-VGDIISYVQYGCDTSRKPRNKH----------VTKRRNCRARINRILEENGSWRISNVVKKHNHQLEP 107
                     6****************99997.67779999****9988777654..........56999****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1028107IPR004330FAR1 DNA binding domain
PfamPF105515.5E-27227319IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPNEFNEEDL IIGPITGMRF SSKDVMFDFY KEHARLPGFC IVKRTSNKKV GDIISYVQYG  60
CDTSRKPRNK HVTKRRNCRA RINRILEENG SWRISNVVKK HNHQLEPALS RLMVGHRSLS  120
KSLKRTLAVK DIAGLRPSKN IRVAEVLVGG PENLGCTPKD CRNYILKSKK LQLQEGDAQS  180
LLKFFSDMQQ NDREFYCSVD VDSFGQFRNV VWVHSHSKVA YEEFHDVICL DTTYLVNRYN  240
MPFASFAGVN QYRQSILLGC ALMSSEDITS YKMVLSTWLG AQNNVHPLAI MTDQCDSIKA  300
VINALMPNTV HRYCIWHIFA KLPTKLSRVL DDKIAKAEFK ALVLDSINIG KFDRRWTDCI  360
KRYNLDGRDW FYKLYLEKEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797803.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1U7Y3U20.0A0A1U7Y3U2_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009797803.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-55FAR1-related sequence 5