PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797496.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 368aa    MW: 42959 Da    PI: 4.6732
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36391312103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+++++++sws+ +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+ 
  XP_009797496.1  39 FLTKTYELVDDANTNDIVSWSRGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQ---------WEFANEGFLRGQRHLLKA 124
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_009797496.1 125 IRRRKTS 131
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-3832123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.16E-3434128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3139128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDPNFALIKD EFPGSSEPSS FMWIPQPMEG LHENGPPPFL TKTYELVDDA NTNDIVSWSR  60
GNNSFIVWDP QTFAMNLLPR YFKHSNFSSF VRQLNTYGFR KVNPDQWEFA NEGFLRGQRH  120
LLKAIRRRKT SNFHPGQASN QGIDSYIELG KLELDGEIDR LRREKQVLMM ELVKLRQQQQ  180
TTKSYIKAME EKLKRTEQKQ QQMMNFMAKA IQNPRFLEQM MQQKERRKEQ IEDEIRKKRR  240
RPIDQGHSNN VGVIELGHSV NDGNHNIKQE PQEYYGEIYG FDDFELERLA VSMQGQSGNT  300
ISIEDYTIEK EDIGELESHE NKAIDEGFWE DLLDENVEDD ITLLGIEEED EDVDVLAQQL  360
GFLGSTPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-243713118123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225240RRKEQIEDEIRKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-143HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797496.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_009797497.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-130HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U7Y6B50.0A0A1U7Y6B5_NICSY; heat stress transcription factor A-6b-like
STRINGXP_009797496.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-132heat shock transcription factor A6B