PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797428.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 304aa    MW: 34395.8 Da    PI: 8.8082
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.57.9e-34622021128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                     lp+G++F+P+d+e++ e+L++kv +++      +   +     i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++     
  XP_009797428.1  62 LPAGVKFDPSDHEIL-EHLEAKVLSDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHteidg 151
                     799***********9.99********95554443...143333666557**********.566677888******************74444665 PP

             NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v+  +g l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_009797428.1 152 gETRWHKTGKTRPVYI-GGGLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 202
                     5778************.999***********66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3856221IPR003441NAC domain
PROSITE profilePS5100533.13662221IPR003441NAC domain
PfamPF023652.5E-1463202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTWRNQSNGE TALPIISAPP SDESNIMITS KVDHEIRIIT CPSCGHSIEL QNQRGIHDLP  60
GLPAGVKFDP SDHEILEHLE AKVLSDTLKL HPLIDEFILT IDGENGICYT HPEKLPGVSK  120
DGQVRHFFHR PSKAYTTGTR KRRKVHTEID GGETRWHKTG KTRPVYIGGG LKGYKKILVL  180
YTNYGRQRKP EKTNWVMHQY HLGENEEEKD GELVVSKVFY QTQPRQCGSL SIRKPVDNNK  240
SRSLSRQDSP ILKTTNFVDY YNPPFISYDI GSQNRDSSPQ LIQNLVVHGD SSSFVIPSNA  300
SKEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-127HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-127HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797428.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotO494591e-120NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1U7Y2Q70.0A0A1U7Y2Q7_NICSY; NAC domain-containing protein 8-like
STRINGXP_009797428.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-110NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]