PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009797428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34395.8 Da PI: 8.8082 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.5 | 7.9e-34 | 62 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d+e++ e+L++kv +++ + + i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_009797428.1 62 LPAGVKFDPSDHEIL-EHLEAKVLSDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHteidg 151 799***********9.99********95554443...143333666557**********.566677888******************74444665 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_009797428.1 152 gETRWHKTGKTRPVYI-GGGLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 202 5778************.999***********66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-38 | 56 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.136 | 62 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-14 | 63 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MTWRNQSNGE TALPIISAPP SDESNIMITS KVDHEIRIIT CPSCGHSIEL QNQRGIHDLP 60 GLPAGVKFDP SDHEILEHLE AKVLSDTLKL HPLIDEFILT IDGENGICYT HPEKLPGVSK 120 DGQVRHFFHR PSKAYTTGTR KRRKVHTEID GGETRWHKTG KTRPVYIGGG LKGYKKILVL 180 YTNYGRQRKP EKTNWVMHQY HLGENEEEKD GELVVSKVFY QTQPRQCGSL SIRKPVDNNK 240 SRSLSRQDSP ILKTTNFVDY YNPPFISYDI GSQNRDSSPQ LIQNLVVHGD SSSFVIPSNA 300 SKEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-127 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-127 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797428.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | O49459 | 1e-120 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1U7Y2Q7 | 0.0 | A0A1U7Y2Q7_NICSY; NAC domain-containing protein 8-like | ||||
STRING | XP_009797428.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-110 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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