PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009797322.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 287aa MW: 31865.6 Da PI: 7.2189

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009797322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48	2.7e-15	82	138	3	59
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v + eN++L k+ +++++ + XP_009797322.1 82 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQVRVENSSLLKRFTDISQKYNEA 138 579*****************************************9999999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-12	76	135	No hit	No description
SMART	SM00338	2.1E-18	80	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.059	82	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.3E-13	83	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-11	84	134	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	5.2E-43	151	276	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
FTFNKVVSSF FSFLFFIGAG FGQELAKVQD KDADEPVGIP PLPAVQKKPG IQVRSTTSGS 60 SGEQSDDDEA EGETTQSTDP TDVKRVRRML SNRESARRSR RRKQAHLTEL ETQVSQVRVE 120 NSSLLKRFTD ISQKYNEAAV DNRVLKADVE TLRAKVKMAE ETVKRVTGLN PLFQAMSEIS 180 TMMMPSFTGS PFDSSADAAV PEQDDPRHHY YQAPENSHMP NHTPRMQNGM IDIPSMENAH 240 QSSAAEAIGG DKIGRTSSMQ RVASLEHLQK RVRGEASTCG TQCRKEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRSRRRKQ
2	98	103	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009797322.1	0.0	PREDICTED: light-inducible protein CPRF2-like, partial
Swissprot	Q99090	1e-99	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A1U7XZB4	0.0	A0A1U7XZB4_NICSY; light-inducible protein CPRF2-like
STRING	XP_009797322.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2934	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	4e-49	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]