PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009797177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 9288.76 Da PI: 5.4925 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.9e-08 | 5 | 40 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ +++a +++G++ W+++a+ + Rt++++ XP_009797177.1 5 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 40 5*****************99.********9.8999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.214 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 7.1E-4 | 2 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-11 | 4 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 5 | 41 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-6 | 5 | 47 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.20E-6 | 6 | 40 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MIGPHWSEED LTHFYQAYRK YGKDWEKVAA AVKPRTAEMV EALYIMHMAY LSLPEGTASA 60 VGLIALMTDH YCYLVWLEIY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797177.1 | 2e-53 | PREDICTED: protein ALWAYS EARLY 3-like | ||||
Refseq | XP_016490540.1 | 2e-53 | PREDICTED: protein ALWAYS EARLY 3-like | ||||
Swissprot | Q6A332 | 1e-30 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A1S4BNW9 | 4e-52 | A0A1S4BNW9_TOBAC; protein ALWAYS EARLY 3-like | ||||
TrEMBL | A0A1U7XYY5 | 4e-52 | A0A1U7XYY5_NICSY; protein ALWAYS EARLY 3-like | ||||
STRING | XP_009797177.1 | 7e-53 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15899 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 5e-33 | DNA binding |
Publications ? help Back to Top | |||
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