PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009796908.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 387aa MW: 43657.4 Da PI: 7.3813

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009796908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	26.8	1.5e-08	40	63	2	25
NAM 2 ppGfrFhPtdeelvveyLkkkveg 25 +pGfrFhPt+eelv +yL++kve+ XP_009796908.1 40 MPGFRFHPTEEELVEFYLRRKVEA 63 79*******************986 PP
2	NAM	98.3	1.1e-30	67	142	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_009796908.1 67 IGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 142 4789**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.378	1	163	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-44	39	162	IPR003441	NAC domain
Pfam	PF02365	7.2E-25	41	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAIVPFTSII MSQSQQDDTI DNINNTIKDD DDDHEHDMVM PGFRFHPTEE ELVEFYLRRK 60 VEALASIGEK EWYFYVPRDR KYRNGDRPNR VTTSGYWKAT GADRMIRSEN SRSIGLKKTL 120 VFYSGKAPKG IRTSWIMNEY RLPQHETERL QKAEISLCRV HKRSGVEDHP SLPRSLPTTR 180 ASSSSSSRGT TNSIKKQHHQ QVVQNSLISP YVAGQTSQQQ IDEKLSTETS ASSTSTDHHH 240 HHHVATSLGL NSLSNSYNSI ALDPMARDTV TSALLTTSSS LSPFASLVSQ SSTGAVVDDL 300 HKLINLDQQV VFHNQNFHNN PINHIPAVAS QQFLQPQVLP QHAQPQSLLF QGSLQSSSSS 360 FSDRLWEWSS IQTDANCKDY QPNNPFR

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAIVPFTSII MSQSQQDDTI DNINNTIKDD DDDHEHDMVM PGFRFHPTEE ELVEFYLRRK  60
VEALASIGEK EWYFYVPRDR KYRNGDRPNR VTTSGYWKAT GADRMIRSEN SRSIGLKKTL  120
VFYSGKAPKG IRTSWIMNEY RLPQHETERL QKAEISLCRV HKRSGVEDHP SLPRSLPTTR  180
ASSSSSSRGT TNSIKKQHHQ QVVQNSLISP YVAGQTSQQQ IDEKLSTETS ASSTSTDHHH  240
HHHVATSLGL NSLSNSYNSI ALDPMARDTV TSALLTTSSS LSPFASLVSQ SSTGAVVDDL  300
HKLINLDQQV VFHNQNFHNN PINHIPAVAS QQFLQPQVLP QHAQPQSLLF QGSLQSSSSS  360
FSDRLWEWSS IQTDANCKDY QPNNPFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-41	41	163	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-41	41	163	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-41	41	163	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-41	41	163	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	6e-41	41	163	19	165	NAC domain-containing protein 19
4dul_B	6e-41	41	163	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	4e-83	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796908.1	0.0	PREDICTED: NAC transcription factor 25-like isoform X2
Swissprot	Q9ZVP8	1e-93	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1U7Y195	0.0	A0A1U7Y195_NICSY; NAC transcription factor 25-like isoform X2
STRING	XP_009796907.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	6e-85	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]