PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796907.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 410aa    MW: 46524.7 Da    PI: 7.2054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50401652128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++
  XP_009796907.1  40 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALASIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 133
                     79***************************.89***************8888899***************************************** PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +glkktLvfy+g+apkg +t+W+m+eyrl
  XP_009796907.1 134 SRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 165
                     ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.82239186IPR003441NAC domain
SuperFamilySSF1019417.06E-5639185IPR003441NAC domain
PfamPF023653.2E-2541165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAIVPFTSII MSQSQQDDTI DNINNTIKDD DDDHEHDMVM PGFRFHPTEE ELVEFYLRRK  60
VEGKRFNVEL ITFLDLYRYD PWELPALASI GEKEWYFYVP RDRKYRNGDR PNRVTTSGYW  120
KATGADRMIR SENSRSIGLK KTLVFYSGKA PKGIRTSWIM NEYRLPQHET ERLQKAEISL  180
CRVHKRSGVE DHPSLPRSLP TTRASSSSSS RGTTNSIKKQ HHQQVVQNSL ISPYVAGQTS  240
QQQIDEKLST ETSASSTSTD HHHHHHVATS LGLNSLSNSY NSIALDPMAR DTVTSALLTT  300
SSSLSPFASL VSQSSTGAVV DDLHKLINLD QQVVFHNQNF HNNPINHIPA VASQQFLQPQ  360
VLPQHAQPQS LLFQGSLQSS SSSFSDRLWE WSSIQTDANC KDYQPNNPFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-554118619165NO APICAL MERISTEM PROTEIN
1ut4_B1e-554118619165NO APICAL MERISTEM PROTEIN
1ut7_A1e-554118619165NO APICAL MERISTEM PROTEIN
1ut7_B1e-554118619165NO APICAL MERISTEM PROTEIN
3swm_A1e-554118622168NAC domain-containing protein 19
3swm_B1e-554118622168NAC domain-containing protein 19
3swm_C1e-554118622168NAC domain-containing protein 19
3swm_D1e-554118622168NAC domain-containing protein 19
3swp_A1e-554118622168NAC domain-containing protein 19
3swp_B1e-554118622168NAC domain-containing protein 19
3swp_C1e-554118622168NAC domain-containing protein 19
3swp_D1e-554118622168NAC domain-containing protein 19
4dul_A1e-554118619165NAC domain-containing protein 19
4dul_B1e-554118619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754404e-83HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796907.10.0PREDICTED: putative NAC domain-containing protein 94 isoform X1
RefseqXP_016470618.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9ZVP81e-118NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A1S4A1V90.0A0A1S4A1V9_TOBAC; putative NAC domain-containing protein 94
TrEMBLA0A1U7XY560.0A0A1U7XY56_NICSY; putative NAC domain-containing protein 94 isoform X1
STRINGXP_009796907.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-109NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]