PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796819.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 711aa    MW: 78563.9 Da    PI: 9.8333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
   XP_009796819.1 106 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKMD-ARAGKQCRERWHNHL 152
                      799*****************************.*************97 PP
2Myb_DNA-binding58.12e-18158200145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eE++llv+a+kqlG++ W+ Ia+++  gRt++++k++w+
   XP_009796819.1 158 KDTWSEEEELLLVEAHKQLGNK-WAEIAKRID-GRTENSIKNHWN 200
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.32101156IPR017930Myb domain
SMARTSM007171.2E-14105154IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-28105199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-26107159IPR009057Homeodomain-like
CDDcd001677.18E-15109152No hitNo description
PfamPF139212.7E-19109168No hitNo description
PROSITE profilePS5129419.321157207IPR017930Myb domain
SMARTSM007172.0E-16157205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-20160205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MDGGSSAFHP YQNLPKNYLG STPPFTAIDR FLLSHENYFY PLSSSSSHAN GVSWPKSLPE  60
PSFIEGFFLN EQENGLIEEV KSVQKNKRES GKKAKEGSST TNYLVKGQWT DEEDRKLLRL  120
VKQFGVRKWA QIAEKMDARA GKQCRERWHN HLRPDIKKDT WSEEEELLLV EAHKQLGNKW  180
AEIAKRIDGR TENSIKNHWN ATKRRMNSRR NKKRKNQQDG QNERKNRSNI LQDYIRSVCF  240
AVDSPLTTAT YHDGGGSGGS GGCSSTTTTI TQRNSNITNA TLTYSDDDSP SLLTHHTCDE  300
EMNFMQNLFG KNSLLSDNNG TKAIDHSMEA KVTQNLFDNN SSISNSAFNS FGENPLSKGQ  360
EAQLQYSQHF CPDVYLPYLL DGSSYNPECF GYGNIMNMQM NQATGCSSGG NKAEVDLMEV  420
KQQIVNAWLR LRLRRGTVAA AEVTRCSSRT REKGRDRVGL RRQCFAFVWV FFAFAFKALG  480
GRFMRQGLVR VDICSIEMAR IRATGPDNQP PVPPARATRG RGRGKGRGAA RTATRAAPAD  540
TPITLAQEQV PYVVEPVGSA QAVSIQTAPG TSQAGGGTQT PTARTPKHVI QGLQTPGFTG  600
VPSDSGRPMK GTGQSVLHHF HGMSSPFSSW RSLCHRPQGG SALAVQAATS GGHICDLLRF  660
AMTRESVSGA RFDEVVDITQ RLELVCSQER VEREAKRSRG SGSFSGVPFG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-411042055106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202213KRRMNSRRNKKR
2208214RRNKKRK
3518527RGRGRGKGRG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754457e-46HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796819.10.0PREDICTED: uncharacterized protein LOC104243341
TrEMBLA0A1U7YC440.0A0A1U7YC44_NICSY; uncharacterized protein LOC104243341
STRINGXP_009796819.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.15e-58myb domain protein 119