PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009796558.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 1001aa MW: 111140 Da PI: 6.0986

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009796558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.2e-41	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ XP_009796558.1 145 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 222 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.4E-33	140	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.98E-38	144	225	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.8E-30	146	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.32E-7	773	886	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.2E-5	775	887	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.06E-6	776	886	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MEASVGERYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV 60 ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIIVD ENDSGGTLSL KLGGQAEPVA 120 EKRTKLAAAA PAPAPAPVTG TTRAVCQVDD CGTDLSKAKD YHRRHKVCEM HSKASRALVG 180 NVMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QSESVANNNS SNDGQASGYS 240 LMSLLKMLSN MHSNGTNHSE DQDLLAHLLR SIAGQGSLNG DKSLSGLLQE SSDLLNNRSI 300 LRNPELASLI SNGSQAPPRA KEHQFTNSAA EVPQKRLDAH DVRLEDARTA SSQSPGILFP 360 PIQSNSQAYA QGRGSTTGRS KLIDFDLNDV YVDSDDNIED IDRSPVQCPS WLQQDSHQSS 420 PPQTSGNSDS ASAQSPSSSS GDTQTRTDRI VFKLFGKDPS DFPFVVRAQI LDWLSHSPTE 480 IESYIRPGCV VLTVYLRLPE SAWEELCYDL NSSLSRLLDV HGDDSFWTKG WIYISVQNQI 540 AFVCDGQVLL DMSLPSGSNE HSTILSVRPI AVPVSGRAQF LVKGYNLSKP STRLLCALES 600 NYLVPEANNE VEEHVDGIDK DDKLQSLDFT CSVPAVTGRG FIEVEDHGLS NSFFPFIVAE 660 EDVCSEIRML ESELDLTSAN YVKGQINNME ARNQAMDFIH ELGWLLHRNN LKARLEHFGP 720 DAVLYPLKRF KWLIDFCVDH EWCAVVKKLL NVLLGGTVGA GESSFLKFAL TEMGLLHRAV 780 RRNSRPLVEL LLTYTPEKVA DELSSEYQSL VEADGEFLFR PDCVGPAGLT PLHVAAGIDG 840 SEDVLDALTD DPGKVAIEAW KNTRDSTGFT PEDYARLRGH YSYIHLVQRK ISKKAISGHI 900 VVDIPIVPSI ENSNQKEEEF ATNSLEISMT ERRPISRPCG LCHKKLAYGS RSRSLLYRPA 960 MFSMVAMAAV CVCVALLFRG SPEVLYIFRP FRWEMVDFGT S

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MEASVGERYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV  60
ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIIVD ENDSGGTLSL KLGGQAEPVA  120
EKRTKLAAAA PAPAPAPVTG TTRAVCQVDD CGTDLSKAKD YHRRHKVCEM HSKASRALVG  180
NVMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QSESVANNNS SNDGQASGYS  240
LMSLLKMLSN MHSNGTNHSE DQDLLAHLLR SIAGQGSLNG DKSLSGLLQE SSDLLNNRSI  300
LRNPELASLI SNGSQAPPRA KEHQFTNSAA EVPQKRLDAH DVRLEDARTA SSQSPGILFP  360
PIQSNSQAYA QGRGSTTGRS KLIDFDLNDV YVDSDDNIED IDRSPVQCPS WLQQDSHQSS  420
PPQTSGNSDS ASAQSPSSSS GDTQTRTDRI VFKLFGKDPS DFPFVVRAQI LDWLSHSPTE  480
IESYIRPGCV VLTVYLRLPE SAWEELCYDL NSSLSRLLDV HGDDSFWTKG WIYISVQNQI  540
AFVCDGQVLL DMSLPSGSNE HSTILSVRPI AVPVSGRAQF LVKGYNLSKP STRLLCALES  600
NYLVPEANNE VEEHVDGIDK DDKLQSLDFT CSVPAVTGRG FIEVEDHGLS NSFFPFIVAE  660
EDVCSEIRML ESELDLTSAN YVKGQINNME ARNQAMDFIH ELGWLLHRNN LKARLEHFGP  720
DAVLYPLKRF KWLIDFCVDH EWCAVVKKLL NVLLGGTVGA GESSFLKFAL TEMGLLHRAV  780
RRNSRPLVEL LLTYTPEKVA DELSSEYQSL VEADGEFLFR PDCVGPAGLT PLHVAAGIDG  840
SEDVLDALTD DPGKVAIEAW KNTRDSTGFT PEDYARLRGH YSYIHLVQRK ISKKAISGHI  900
VVDIPIVPSI ENSNQKEEEF ATNSLEISMT ERRPISRPCG LCHKKLAYGS RSRSLLYRPA  960
MFSMVAMAAV CVCVALLFRG SPEVLYIFRP FRWEMVDFGT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	145	219	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796558.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1U7Y0A3	0.0	A0A1U7Y0A3_NICSY; squamosa promoter-binding-like protein 1
STRING	XP_009796558.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]