PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009796501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 456aa MW: 49810.8 Da PI: 8.4147 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.3 | 2.6e-39 | 176 | 253 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dls+akeyhr+h+vC+ hsk+p+v++ g e+rfCqqCsrfh+ls+fDe+krsCrrrL++hn+rrrk+q+ XP_009796501.1 176 CCLVEGCNLDLSSAKEYHRKHRVCHSHSKCPKVIIGGAERRFCQQCSRFHSLSDFDEKKRSCRRRLSDHNARRRKPQQ 253 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.7E-31 | 170 | 238 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.616 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.89E-37 | 175 | 256 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.6E-30 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MEWNVKWDWG DLMMFGSEAC GSLKELQLTD WGVDQEGELD RRSFNLSGFG GSVGGYGSDM 60 GRSSSIKSSI SASTDSSPNE TLKASSFTFE ASNGSQGNLG KDVEQCRDEP YGCSPPMEAL 120 IGYDGPLTGL KLGKRTVESN SGGINVKLPS SSTIPVSSVS AAKKKKSSSQ NALIPCCLVE 180 GCNLDLSSAK EYHRKHRVCH SHSKCPKVII GGAERRFCQQ CSRFHSLSDF DEKKRSCRRR 240 LSDHNARRRK PQQETIQFNS TRLSSWFYDN SKSMNFVFNN GLLLQSKTTA DSTWGTSEVP 300 KFTITRGLTS KPYRAGSINV QSLVGGIKLP GATKMQTNAS KGTTTEFFSQ GVKENMFSLN 360 MGAAPELPCA LSLLSNKSSS EPESTSIGHP THVNQISITE QVIPENLPLG STDLWQAEQY 420 LLNPRIHALV ANGYSGGSFQ LSKDPFDNFY FNGLMN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-26 | 168 | 250 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 232 | 249 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796500.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_009796501.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A1U7YCJ3 | 0.0 | A0A1U7YCJ3_NICSY; squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A240EUR7 | 0.0 | A0A240EUR7_TOBAC; Squamosa promter-binding-like protein 15 | ||||
STRING | XP_009796500.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-49 | squamosa promoter binding protein-like 2 |