PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009796445.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 479aa MW: 54978.7 Da PI: 7.8617 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.2 | 7.6e-54 | 101 | 228 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ XP_009796445.1 101 LPPGFRFHPTDEELITFYLASKVFNGTFCG-IQIAEVDLNRCEPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSA 194 79*************************877.67***************8888999**************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+l g+kktLvfykgrapkgekt+Wvmheyrl XP_009796445.1 195 tNGALLGMKKTLVFYKGRAPKGEKTKWVMHEYRL 228 78899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-63 | 97 | 250 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.513 | 101 | 250 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 102 | 228 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MWGFIVPFNP INTHHHHPLL LILSNPCFLH LFHTFFTLLL LPFLTLVSVP NLFSFLFSFV 60 YIIFHFLTRY YYHLIPSFIM LSMEEILCEL SREDMNNEKG LPPGFRFHPT DEELITFYLA 120 SKVFNGTFCG IQIAEVDLNR CEPWELPEVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG 180 YWKATGKDRE VYSATNGALL GMKKTLVFYK GRAPKGEKTK WVMHEYRLDG DFSYRYSSKE 240 EWVICRILHK IGEKKNPIYQ AAGQNYGYPT SLKTWPSSSF LNTATAAEAA PNPILAETPN 300 PKTTTTTHWQ ESFQISQNSM QSLHNFYLFH HQENDLMKSL FNPINVSQTN LFPINNSVLS 360 SATSFSTSQS TKKYKEDINK NSSLSSFLVS NSKKNEKHQV PLMQANTTMK TEASFSPYSG 420 CYNDQNPMAT NFGMNNSTDW SLVGIEGMHF NGGCTQSQMV LDHMHCPIKI AAESWPLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 101 | 250 | 20 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB255374 | 1e-171 | AB255374.1 Petunia x hybrida PhCUC3 mRNA for CUP-SHAPED COTYLEDON3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796445.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1 | ||||
Refseq | XP_009796446.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X2 | ||||
TrEMBL | A0A1U7Y3B5 | 0.0 | A0A1U7Y3B5_NICSY; protein CUP-SHAPED COTYLEDON 3-like isoform X1 | ||||
STRING | XP_009796446.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 3e-98 | NAC family protein |