PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009796421.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 351aa MW: 37467.8 Da PI: 7.8454

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009796421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.3	3.5e-67	138	302	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssa 94 +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++++ + a+ +++++k++r +s++++++s+t++s++ XP_009796421.1 138 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGsssqSTSSAKKPRLVNSQATTTASHTSTSNT 232 5689*******************************************98766655544332233447788899999999********** PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++tss lP +v+++avf+cvrv+svddg++e+aYq++v igGhvfkG+LydqG+ee XP_009796421.1 233 TPPRSFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGDDEFAYQAVVRIGGHVFKGFLYDQGIEE 302 ****999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-62	139	301	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.9E-27	141	183	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-28	253	300	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MWSASSSRQM QINYGLSPEM GMFVVHPASF HHHHHHQHSH QENTINFDPI NGSNISTTNT 60 SLGVGVIPLL TATPLTNMVS FDDQDLVSRN RGNDNEGGGF QFFSNQQPQN STNYTKNSNI 120 LGSGSGNNNI GGSVSSTSSA TCQDCGNQAK KDCPHRRCRT CCKSRGFDCT THVKSTWVPA 180 ARRRERQLIG GTSTNVNVAA GSSSQSTSSA KKPRLVNSQA TTTASHTSTS NTTPPRSFDT 240 SSSHQDASFK ASLPGQVRAP AVFKCVRVTS VDDGDDEFAY QAVVRIGGHV FKGFLYDQGI 300 EEGKDNNNYP NLSDLHLGGS GNIINETSDI YAASTGGGGL LGGSNYGNQI N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MWSASSSRQM QINYGLSPEM GMFVVHPASF HHHHHHQHSH QENTINFDPI NGSNISTTNT  60
SLGVGVIPLL TATPLTNMVS FDDQDLVSRN RGNDNEGGGF QFFSNQQPQN STNYTKNSNI  120
LGSGSGNNNI GGSVSSTSSA TCQDCGNQAK KDCPHRRCRT CCKSRGFDCT THVKSTWVPA  180
ARRRERQLIG GTSTNVNVAA GSSSQSTSSA KKPRLVNSQA TTTASHTSTS NTTPPRSFDT  240
SSSHQDASFK ASLPGQVRAP AVFKCVRVTS VDDGDDEFAY QAVVRIGGHV FKGFLYDQGI  300
EEGKDNNNYP NLSDLHLGGS GNIINETSDI YAASTGGGGL LGGSNYGNQI N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796421.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_016458851.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-80	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1S3Z339	0.0	A0A1S3Z339_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBL	A0A1U7Y389	0.0	A0A1U7Y389_NICSY; protein LATERAL ROOT PRIMORDIUM 1
STRING	XP_009796421.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]