PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796372.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 274aa    MW: 31854.6 Da    PI: 6.8618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18147197255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y GVr ++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+++++g
  XP_009796372.1 147 HYIGVRKRP-WGKYAAEIRDSTRNG--MRVWLGTFNTAEEAALAYDQAALSMRG 197
                     799******.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-28146205No hitNo description
SuperFamilySSF541712.48E-22147206IPR016177DNA-binding domain
PROSITE profilePS5103221.918147205IPR001471AP2/ERF domain
SMARTSM003803.4E-35147211IPR001471AP2/ERF domain
PfamPF008472.1E-13147197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-29147206IPR001471AP2/ERF domain
PRINTSPR003671.9E-9148159IPR001471AP2/ERF domain
PRINTSPR003671.9E-9171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLTIQEFLLK CHEKLFNSYM EMEFPSLQIQ YPNFNFFQDQ SPLQWNNELF LDHDHLTNYP  60
WEIDSVDEKE DRQVPRSSSS SDVTNSSKIR NHHEEVDSFD EKDDRQIPRS SSSSDVTNSS  120
KGSNHHEEEV TSHNSTQKKD TTKEEKHYIG VRKRPWGKYA AEIRDSTRNG MRVWLGTFNT  180
AEEAALAYDQ AALSMRGPLA LLNFPMDKVR ESLENIKYFC EDGLSPAAVL KATNKMRCVK  240
HRRNRKKRKK KTVLVFQDLG ADLLDELLMS SSQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-28146206161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241249RRNRKKRKK
2244250RKKRKKK
3245249KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796372.10.0PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLA0A1U7XWH50.0A0A1U7XWH5_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009796372.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-36ethylene response factor 1