PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796235.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 376aa    MW: 42085.5 Da    PI: 7.5583
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.18.2e-33243298156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv+a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  XP_009796235.1 243 KQRRCWSPELHRRFVDALHQLGGPQVATPKQIREIMQVDGLTNDEVKSHLQKYRLH 298
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-30240301IPR009057Homeodomain-like
PROSITE profilePS5129415.001240300IPR017930Myb domain
SuperFamilySSF466893.33E-18241301IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-27243298IPR006447Myb domain, plants
PfamPF002494.9E-8245296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGSSSKELNL NLNCVYVPKI ISDVLTEVSA IDDTSKKLTK LNHFVVSLEE ELKKIEAFKR  60
ELPLCMVLLK DAIERLKEEA LQYKGKNKGP VMAEFIPLKG NSDESGRIKK SNDISDKKNW  120
MSSAQLWSTP VHYESIDLGK QGQFLHLKSS GVEGTERENE YQLGIYKLKN DRGAFMSFEE  180
NSVRSVKDVK KGLPVNDLSL CMTVDEREKG PNPVDASVKR ENGGGRSNGC SSNFLQEKSQ  240
QRKQRRCWSP ELHRRFVDAL HQLGGPQVAT PKQIREIMQV DGLTNDEVKS HLQKYRLHVR  300
RVPVSGCSWS TMDEIGESSK TNATQSGSPE GPLHFTGSAS AKGVSINEGE TMEEEDNKSE  360
SYTWNGQIPK SIEAHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13243296255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754416e-45HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796235.10.0PREDICTED: uncharacterized protein LOC104242830
TrEMBLA0A1U7YBR50.0A0A1U7YBR5_NICSY; uncharacterized protein LOC104242830
STRINGXP_009796235.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.19e-60G2-like family protein