PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009795898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 333aa MW: 37326.1 Da PI: 6.8783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.2e-15 | 37 | 79 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E l+++++ lG++ W+ Ia++++ gRt++++k++w+ XP_009795898.1 37 RGSFSHQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 79 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 17 | 30 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-20 | 17 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.054 | 18 | 31 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 31 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.71 | 32 | 86 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 36 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 37 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-10 | 39 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDAIQYFCHE TVKKGLQRCG KSCRLRWINY LRPDLKRGSF SHQEAALIIE LHSILGNRWA 60 QIAKHLPGRT DNEVKNFWNS SIKKKLLSHG TLSDFSMIFP NNLTTTSPNP SFDNFYPLNS 120 TPINSIPIST NSPLILQVDH QMNNNHLNAD LNLNPVVPSL INPLSFDSIS NDPTWFNFNY 180 PHPQHDLDYN QNVLKQDNSN SMLTSNISLN YTNGENFMDS RNAAIKTHQD LLMVPLLPKL 240 SEMIKGNGGI VESSPPAASQ QIESMVGSSL PCTFPNGYIH PHYGMNGVHE MEQIECMHMS 300 SFPSSSPSSS KSSPSSCNTQ FMMNPSLPTS WES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 18 | 86 | 40 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 5e-51 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795898.1 | 0.0 | PREDICTED: transcription factor MYB86 isoform X2 | ||||
Refseq | XP_016479068.1 | 0.0 | PREDICTED: transcription factor MYB26-like isoform X2 | ||||
TrEMBL | A0A1S4ARE6 | 0.0 | A0A1S4ARE6_TOBAC; transcription factor MYB26-like isoform X2 | ||||
TrEMBL | A0A1U7XYA0 | 0.0 | A0A1U7XYA0_NICSY; transcription factor MYB86 isoform X2 | ||||
STRING | XP_009795891.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 4e-46 | myb domain protein 26 |