PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009795773.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1001aa MW: 109579 Da PI: 5.6465

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009795773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_009795773.1 595 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 646 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.188	578	666	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-26	599	646	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-22	898	984	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-24	901	983	No hit	No description
SMART	SM00666	1.1E-23	901	983	IPR000270	PB1 domain
PROSITE profile	PS51745	20.581	901	983	IPR000270	PB1 domain
Pfam	PF00564	7.6E-19	901	982	IPR000270	PB1 domain
CDD	cd06407	3.54E-33	902	982	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MERGVGFWAS PRGQMEGVVS FDASARSSNV DDSFNNVMEI MNLDAYTGWC TSPSAAEQMF 60 ASYAAFSQMN SMSQSYAPFE GLSYAEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDEQLH 120 FVVDSTDGVG LVAKRSKNSS QQADDADIGN SMIVRSPSQP LAERMLRALA MFKESSGAGI 180 LAQVWIPMKN KDQYVLSTCE QPYLLDQALS GYREVSRKFT FDAETKPGSI PGLPGRVFSS 240 RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKPN 300 FDLEMDHVCR ALQAVNLRSI APPRLHSQTL SKNQRAALAE ITDVLRAVCH AHKLPLALTW 360 IPCSVTEGEG DESIRVLARG CNASSNEKCV LCAEDTACYV SDKEMQGFVH ACMEHYLEEG 420 EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF 480 FLPISMKGST EQQLLLNNLS GTMQRICRSL RTVSDAELVG QGATFGLQDG FAPNLPPITL 540 SRRNSQHSLD SNSNSASVAP LGVSDSKSAG MQADGCREQT MIGSRRQMEK KRSTAEKHVS 600 LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV 660 QGVEGGLKFD PATGSLVPAS SIIQDFDAQQ SIFFPCKDVS VKNPNSVFQD AVSVPSTPGI 720 DKENSMVKME EDSYVDGNQL GQSNHINTSS FKGGNKSSIP VSGFCYEPKL AALDAMTSRP 780 ASQTMLLTNS RNASLGSFHT KEGCRRWGLD NDTMDNFECH FTSQCSYSKA AGDDGDTKIK 840 GDNEMDGDGG VIEHNQASSS AMTDSSNGSE SMMNGSSSSS RSHGARKHSK VEANFGDSGS 900 TITVKATYKE DTTRFKFEPS AGCFQLYEEV AKRFKLQTGT FQLKYLDDEE EWVMLVNDAD 960 LHECLEILDF VGGRTIKFLV RDTPYAMGSS GSSNCFLASG S

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MERGVGFWAS PRGQMEGVVS FDASARSSNV DDSFNNVMEI MNLDAYTGWC TSPSAAEQMF  60
ASYAAFSQMN SMSQSYAPFE GLSYAEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDEQLH  120
FVVDSTDGVG LVAKRSKNSS QQADDADIGN SMIVRSPSQP LAERMLRALA MFKESSGAGI  180
LAQVWIPMKN KDQYVLSTCE QPYLLDQALS GYREVSRKFT FDAETKPGSI PGLPGRVFSS  240
RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKPN  300
FDLEMDHVCR ALQAVNLRSI APPRLHSQTL SKNQRAALAE ITDVLRAVCH AHKLPLALTW  360
IPCSVTEGEG DESIRVLARG CNASSNEKCV LCAEDTACYV SDKEMQGFVH ACMEHYLEEG  420
EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF  480
FLPISMKGST EQQLLLNNLS GTMQRICRSL RTVSDAELVG QGATFGLQDG FAPNLPPITL  540
SRRNSQHSLD SNSNSASVAP LGVSDSKSAG MQADGCREQT MIGSRRQMEK KRSTAEKHVS  600
LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV  660
QGVEGGLKFD PATGSLVPAS SIIQDFDAQQ SIFFPCKDVS VKNPNSVFQD AVSVPSTPGI  720
DKENSMVKME EDSYVDGNQL GQSNHINTSS FKGGNKSSIP VSGFCYEPKL AALDAMTSRP  780
ASQTMLLTNS RNASLGSFHT KEGCRRWGLD NDTMDNFECH FTSQCSYSKA AGDDGDTKIK  840
GDNEMDGDGG VIEHNQASSS AMTDSSNGSE SMMNGSSSSS RSHGARKHSK VEANFGDSGS  900
TITVKATYKE DTTRFKFEPS AGCFQLYEEV AKRFKLQTGT FQLKYLDDEE EWVMLVNDAD  960
LHECLEILDF VGGRTIKFLV RDTPYAMGSS GSSNCFLASG S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795771.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795773.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795774.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795775.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795776.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795777.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795778.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U7XXY1	0.0	A0A1U7XXY1_NICSY; protein NLP9-like
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]