PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009795565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 529aa MW: 59802.9 Da PI: 6.2933 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 242.6 | 1.7e-74 | 151 | 528 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL cA a++ g+++++q+lL l+elas + d+++Rlaa+ ++AL ++l++ +s+ + ++ +++ ++ n++ +l f+++ P++++ + XP_009795565.1 151 EHLLNPCAAAITVGNMNRVQHLLYVLHELASFTCDANHRLAAHGLRALTHHLSSPGSSSS-SVGVTNFASANHKFFRDSLINFNDINPWFRIPNN 244 699**************************************************9666655.456666666667777777777************* PP GRAS 97 taNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfef 178 +aN+a+l+ + ++ + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + ++ + ++L fA+++++++++ XP_009795565.1 245 IANSAVLQILGEHdklKNLHILDIGVSHGVQWPTLLEELTRRSgGPPPLVRLTVITPTVENaelggtpfvIGPPGYNFSSQLLAFAKAININLQI 339 **********999555667************************55666*******99777688999888878888999***************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfds 270 n l l++l+ + ++ +++E l+ + +++lh+l+ ++ ++ r+e+L+++ksl Pk vvv+e+++d+ ns ++F + f++ +ey + ++ds XP_009795565.1 340 NRLDNFPLQNLNSQVINSSEDEILVTCAQFRLHNLH---HNNPDDRTEFLRILKSLDPKGVVVSENNIDCscNScGDFTTTFSRRVEYLWRFLDS 431 **8777*****************************9...66666778*******************96664354259****************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364 +++ + + r + Er++++ e+ n++++ g++ +e++ekW er++++GF + ++e+a + a++llrk++ +++ rvee++g++ l Wk+ XP_009795565.1 432 TSVAY----KGRESEERRMMEGEAANALTNMGEM----NERKEKWCERMRSVGFVKEVFGEDAIDGARALLRKYDsNWEIRVEERDGCVDLWWKG 518 *9985....77888888888889**********9....88888********************************9999**************** PP GRAS 365 rpLvsvSaWr 374 +p+ ++S W+ XP_009795565.1 519 QPISFCSLWK 528 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.94 | 124 | 507 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-72 | 151 | 528 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MTIDEPEPNS NSDPISEWLD TLSDVPSFLD EPYNYPEDFN FYGDSWWIPP NQDKHIVNHD 60 IIDNNICTSF NYSSPVNAAT STIPPEPIIL DLSKKRKTSG SESDHNPKVS RKNRNRHTNE 120 ADEMKKSTGH KRVTNKSTTN NCSNKEGRWA EHLLNPCAAA ITVGNMNRVQ HLLYVLHELA 180 SFTCDANHRL AAHGLRALTH HLSSPGSSSS SVGVTNFASA NHKFFRDSLI NFNDINPWFR 240 IPNNIANSAV LQILGEHDKL KNLHILDIGV SHGVQWPTLL EELTRRSGGP PPLVRLTVIT 300 PTVENAELGG TPFVIGPPGY NFSSQLLAFA KAININLQIN RLDNFPLQNL NSQVINSSED 360 EILVTCAQFR LHNLHHNNPD DRTEFLRILK SLDPKGVVVS ENNIDCSCNS CGDFTTTFSR 420 RVEYLWRFLD STSVAYKGRE SEERRMMEGE AANALTNMGE MNERKEKWCE RMRSVGFVKE 480 VFGEDAIDGA RALLRKYDSN WEIRVEERDG CVDLWWKGQP ISFCSLWKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 6e-31 | 147 | 528 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 4e-31 | 147 | 528 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 4e-31 | 147 | 528 | 30 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF032736 | 0.0 | EF032736.1 Nicotiana benthamiana nodulation signaling pathway 1-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795565.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Refseq | XP_016435382.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A1S3X686 | 0.0 | A0A1S3X686_TOBAC; nodulation-signaling pathway 1 protein-like | ||||
TrEMBL | A0A1U7Y9Q5 | 0.0 | A0A1U7Y9Q5_NICSY; nodulation-signaling pathway 1 protein-like | ||||
STRING | XP_009795565.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-146 | GRAS family protein |
Publications ? help Back to Top | |||
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