PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795456.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 174aa    MW: 20288.8 Da    PI: 6.6387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.6e-12246244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT eEd+l+ +a  +++ +   +W +Ia +++ g+t ++++ ++
   XP_009795456.1  2 SKWTREEDKLFEHALVLYPENiadRWQLIADHVP-GKTTEDIIAHY 46
                     58********************************.**********9 PP
2Myb_DNA-binding47.15.6e-1587131347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_009795456.1  87 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKY 131
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.937154IPR017930Myb domain
SMARTSM007175.5E-7152IPR001005SANT/Myb domain
SuperFamilySSF466892.35E-12257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-6349IPR009057Homeodomain-like
CDDcd001678.52E-10346No hitNo description
PfamPF002492.6E-10347IPR001005SANT/Myb domain
PROSITE profilePS5129422.67380136IPR017930Myb domain
SuperFamilySSF466891.52E-1782136IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-1883135IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-1284130IPR009057Homeodomain-like
SMARTSM007174.4E-1284134IPR001005SANT/Myb domain
CDDcd001675.10E-1087132No hitNo description
PfamPF002496.5E-1387131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSKWTREEDK LFEHALVLYP ENIADRWQLI ADHVPGKTTE DIIAHYDDLV HDLLEIDSGR  60
IELPTYTDDP VESNKKNTEI ERKKGTPWTE EEHRLFLIGL EKYGKGDWRS ISRNVVVTRT  120
PTQVASHAQK YFIRQQAMKK ERKRSSIHDI TTAVDTNPVP PQSSFQNQRG NFTM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2433391e-115AJ243339.1 Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795456.11e-128PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016473251.11e-128PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-55DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S4A9J21e-127A0A1S4A9J2_TOBAC; transcription factor DIVARICATA-like
TrEMBLA0A1U7Y0L81e-127A0A1U7Y0L8_NICSY; transcription factor DIVARICATA-like
STRINGXP_009795456.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-69MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]