PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009795437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 259aa MW: 28742.2 Da PI: 4.3258 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 90.1 | 3.6e-28 | 131 | 248 | 1 | 126 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+ L++c eav+ ++l+la+al+ ++e+a ++ +p++++a+yf+eAL +++++ +l ++++ + ++l+ ++ev P+l+f++ XP_009795437.1 131 LVKILMACGEAVQRNNLNLADALVRLIREHAVSQFRPIKKVATYFAEALDQKIQG--MNLEDIMEFCCYT-----DNLMQ-MRLHEVRPYLEFAY 217 6789***************************************************..4444444444443.....33333.3489********** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWp 126 N+aIl+a+++++rvHiiDf+++qG QW+ XP_009795437.1 218 SSVNRAILDAFANSSRVHIIDFSLNQGPQWL 248 ******************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.321 | 105 | 259 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-25 | 131 | 248 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSMDTIMENS DSFVSTTDAI IHGASNISGW TQSLISDPNI PNSSTSVDDH LQQISTAGNG 60 DDMIVSCATS RIFNSIDVSA FSRNINAVCD NYSDKLAEEG SESSNEMRSR DGLELCLGLS 120 IGSGAVNEEL LVKILMACGE AVQRNNLNLA DALVRLIREH AVSQFRPIKK VATYFAEALD 180 QKIQGMNLED IMEFCCYTDN LMQMRLHEVR PYLEFAYSSV NRAILDAFAN SSRVHIIDFS 240 LNQGPQWLFG SLEYNWLTR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795437.1 | 0.0 | PREDICTED: DELLA protein GAI-like | ||||
TrEMBL | A0A1U7XTS4 | 0.0 | A0A1U7XTS4_NICSY; DELLA protein GAI-like | ||||
STRING | XP_009795437.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA23815 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 8e-32 | GRAS family protein |