PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795344.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 454aa    MW: 51319 Da    PI: 8.3229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-10340387448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
   XP_009795344.1 340 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTPVDLKDKWRNLL 387
                      ***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.807332391IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-13333392IPR009057Homeodomain-like
SuperFamilySSF466891.15E-16334397IPR009057Homeodomain-like
SMARTSM007171.0E-11336389IPR001005SANT/Myb domain
PfamPF002498.9E-8340387IPR001005SANT/Myb domain
CDDcd116602.97E-20340388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MERKGVLYNI DSSIAAKRED EINQEVLDLK RSHFEAGKIQ AQDDLSTPCD DYLLDIEFAE  60
SITDLDYGSS RGLLDPILES QISLSPGLVV QESQSQNAMF GLTNSELHDL SRDKCESQIL  120
VEYNAVKFPT AFTPGDISNV DDVAGFFAEA ASSEKINDSV IDHSVLTSKG ISFMSNAMRN  180
EGQDVNREIF DMHESSAISL PVTSQAMNID IPLTQKRLRK PTRRYIDESS DLNAKRSRKR  240
EEVSTCASAS KDKLPRVRCQ KKSRAEFTEM ELFPEESSCK AIQVPFASLV NEECDKRHTS  300
NAIQVMKAHK EVTVVNPKDD PIAPKKLDQD GARRKHHRLW TVSEVRKLID GVAQYGVGRW  360
SHIKKLYFSS SAHRTPVDLK DKWRNLLKAC YLQKQSKITE KGKHNLSWRP LPKSVLHRVS  420
ELANMHPYPR NGRCKSRSPC SSSFPVHTNR SNIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795344.10.0PREDICTED: uncharacterized protein LOC104242064 isoform X2
RefseqXP_016455873.10.0PREDICTED: uncharacterized protein LOC107779884 isoform X2
TrEMBLA0A1S3YUQ80.0A0A1S3YUQ8_TOBAC; uncharacterized protein LOC107779884 isoform X2
TrEMBLA0A1U7Y7W60.0A0A1U7Y7W6_NICSY; uncharacterized protein LOC104242064 isoform X2
STRINGXP_009795343.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-27TRF-like 6