PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009795343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 498aa MW: 56221.5 Da PI: 8.1171 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 1e-09 | 384 | 431 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+v+q+G g+W+ I + +Rt+ ++k++w+++l XP_009795343.1 384 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTPVDLKDKWRNLL 431 ***************************999****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.807 | 376 | 435 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-13 | 377 | 435 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.29E-16 | 378 | 441 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 380 | 433 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-7 | 384 | 431 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.43E-20 | 384 | 432 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MNQNIAYRSG FASLGVWFDE SETRDVHASV SGVLCFDEKR VLKGMERKGV LYNIDSSIAA 60 KREDEINQEV LDLKRSHFEA GKIQAQDDLS TPCDDYLLDI EFAESITDLD YGSSRGLLDP 120 ILESQISLSP GLVVQESQSQ NAMFGLTNSE LHDLSRDKCE SQILVEYNAV KFPTAFTPGD 180 ISNVDDVAGF FAEAASSEKI NDSVIDHSVL TSKGISFMSN AMRNEGQDVN REIFDMHESS 240 AISLPVTSQA MNIDIPLTQK RLRKPTRRYI DESSDLNAKR SRKREEVSTC ASASKDKLPR 300 VRCQKKSRAE FTEMELFPEE SSCKAIQVPF ASLVNEECDK RHTSNAIQVM KAHKEVTVVN 360 PKDDPIAPKK LDQDGARRKH HRLWTVSEVR KLIDGVAQYG VGRWSHIKKL YFSSSAHRTP 420 VDLKDKWRNL LKACYLQKQS KITEKGKHNL SWRPLPKSVL HRVSELANMH PYPRNGRCKS 480 RSPCSSSFPV HTNRSNIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795343.1 | 0.0 | PREDICTED: uncharacterized protein LOC104242064 isoform X1 | ||||
Refseq | XP_016455872.1 | 0.0 | PREDICTED: uncharacterized protein LOC107779884 isoform X1 | ||||
TrEMBL | A0A1S3YV78 | 0.0 | A0A1S3YV78_TOBAC; uncharacterized protein LOC107779884 isoform X1 | ||||
TrEMBL | A0A1U7XWM9 | 0.0 | A0A1U7XWM9_NICSY; uncharacterized protein LOC104242064 isoform X1 | ||||
STRING | XP_009795343.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9155 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-26 | TRF-like 6 |