PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795343.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 498aa    MW: 56221.5 Da    PI: 8.1171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.31e-09384431448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
   XP_009795343.1 384 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTPVDLKDKWRNLL 431
                      ***************************999****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.807376435IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-13377435IPR009057Homeodomain-like
SuperFamilySSF466891.29E-16378441IPR009057Homeodomain-like
SMARTSM007171.0E-11380433IPR001005SANT/Myb domain
PfamPF002491.0E-7384431IPR001005SANT/Myb domain
CDDcd116604.43E-20384432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MNQNIAYRSG FASLGVWFDE SETRDVHASV SGVLCFDEKR VLKGMERKGV LYNIDSSIAA  60
KREDEINQEV LDLKRSHFEA GKIQAQDDLS TPCDDYLLDI EFAESITDLD YGSSRGLLDP  120
ILESQISLSP GLVVQESQSQ NAMFGLTNSE LHDLSRDKCE SQILVEYNAV KFPTAFTPGD  180
ISNVDDVAGF FAEAASSEKI NDSVIDHSVL TSKGISFMSN AMRNEGQDVN REIFDMHESS  240
AISLPVTSQA MNIDIPLTQK RLRKPTRRYI DESSDLNAKR SRKREEVSTC ASASKDKLPR  300
VRCQKKSRAE FTEMELFPEE SSCKAIQVPF ASLVNEECDK RHTSNAIQVM KAHKEVTVVN  360
PKDDPIAPKK LDQDGARRKH HRLWTVSEVR KLIDGVAQYG VGRWSHIKKL YFSSSAHRTP  420
VDLKDKWRNL LKACYLQKQS KITEKGKHNL SWRPLPKSVL HRVSELANMH PYPRNGRCKS  480
RSPCSSSFPV HTNRSNIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795343.10.0PREDICTED: uncharacterized protein LOC104242064 isoform X1
RefseqXP_016455872.10.0PREDICTED: uncharacterized protein LOC107779884 isoform X1
TrEMBLA0A1S3YV780.0A0A1S3YV78_TOBAC; uncharacterized protein LOC107779884 isoform X1
TrEMBLA0A1U7XWM90.0A0A1U7XWM9_NICSY; uncharacterized protein LOC104242064 isoform X1
STRINGXP_009795343.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-26TRF-like 6