PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795299.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 266aa    MW: 31010 Da    PI: 9.4159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++vk++G g+W+++a+  g++R +k+c++rw +yl
   XP_009795299.1 16 KGPWTAEEDRLLIEYVKLHGEGRWSSVASVAGLKRNAKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding34.25.9e-1176113847
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++l+++++ ++G++ W+ Ia+ ++ gRt +++k++w+++
   XP_009795299.1  76 AEKLILELHVRWGNR-WAIIAKNLP-GRTYNEIKNYWRTH 113
                      5899***********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9421167IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-231266IPR009057Homeodomain-like
SuperFamilySSF466896.12E-2813110IPR009057Homeodomain-like
SMARTSM007171.7E-171565IPR001005SANT/Myb domain
PfamPF002491.3E-171663IPR001005SANT/Myb domain
CDDcd001671.18E-121863No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1967117IPR009057Homeodomain-like
SMARTSM007171.4E-968116IPR001005SANT/Myb domain
PROSITE profilePS5129415.14768118IPR017930Myb domain
PfamPF002491.3E-977113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSEEICSRGM TKGWRKGPWT AEEDRLLIEY VKLHGEGRWS SVASVAGLKR NAKSCRLRWV  60
NYLRPDLKKG QITSHAEKLI LELHVRWGNR WAIIAKNLPG RTYNEIKNYW RTHFKKKTQN  120
FRDKSEKIKS RFLKSQKFKQ HHHQQSNTET DINSVVSHND KKNYYASILN KLGNRIASLP  180
NENVNKIPTL PQGNQEMDIL YPNIADQEQD DDFFYSILND HIPVPVLESS SNEDIMWDGL  240
WNLDDFQCNF SATTYDTSLA IPSLNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795299.10.0PREDICTED: myb-related protein 340-like
TrEMBLA0A1U7Y7S00.0A0A1U7Y7S0_NICSY; myb-related protein 340-like
STRINGXP_009795299.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-68myb domain protein 305